computational-biology1

2 x Intel Xeon E5320 testing with a HP ProLiant DL360 G5 and AMD ES1000 128MB on CentOS 6.8 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1703226-RI-COMPUTATI22.

computational-biology1ProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDesktopDisplay DriverCompilerFile-SystemScreen Resolutioncomputational-biology12 x Intel Xeon E5320 @ 1.60GHz (8 Cores)HP ProLiant DL360 G5Intel 5000P MCH8 x 1024 MB DDR2-667MHz106GBAMD ES1000 128MBPhilips 170SBroadcom NetXtreme II BCM5708 GigabitCentOS 6.82.6.32-642.el6.x86_64 (x86_64)GNOMEradeon 7.6.1GCC 4.4.7 20120313ext41280x1024OpenBenchmarking.org- --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic - Scaling Governor: p4-clockmod userspace- SELinux: Enabled.

computational-biology1hmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentcomputational-biology126.7213.54OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchcomputational-biology1612182430SE +/- 0.47, N = 626.721. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentcomputational-biology13691215SE +/- 0.51, N = 613.541. (CC) gcc options: -O3 -lm -lpthread

Phoronix Test Suite v10.8.4