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Bioinformatics 3 Tests
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April 29 2012
 
ivan1
August 06 2014
 
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phoronixProcessorMotherboardMemoryDiskGraphicsAudioMonitorChipsetNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionDisplay Drivertestivan1AMD Phenom II X4 945 @ 3.00GHz (4 Cores)Gigabyte GA-MA78GM-S2H6144MB160GB Seagate ST3160215ASGallium 0.4 on AMD RS780 512MBRealtek ALC889APLE2607WSCalculate Linux Desktop 11.15 GNOME3.3.3-calculate (x86_64)GNOME Shell 3.2.2.1X Server 1.11.22.1 Mesa 7.11.2 Gallium 0.4GCC 4.5.3 + LLVM 2.9ext41920x1200AMD Phenom II X6 1100T @ 3.30GHz (6 Cores)ASUS M5A88-MAMD RS8802 x 4096 MB 1600MHz60GB Corsair Force LSASUS AMD Radeon HD 4250 256MBRealtek ALC892DELL 1504FPRealtek RTL8111/8168/8411Ubuntu 14.043.13.0-32-lowlatency (x86_64)radeon 7.2.0GCC 4.8.21024x768OpenBenchmarking.orgCompiler Details- ivan1: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v Processor Details- ivan1: Scaling Governor: acpi-cpufreq ondemand

test vs. ivan1 ComparisonPhoronix Test SuiteBaseline+52.6%+52.6%+105.2%+105.2%+157.8%+157.8%210.4%75.2%74.6%72.1%70.9%70%66.6%58.8%55.5%44.7%43.8%41.4%35.3%31.5%22.7%21.5%Total TimeM.S.AP.D.SSolitaireC.S.T2.F.CLU.AEP.BBlowfishG.I.R.1.SUA.ATime To CompileP.P.SIS.CQuasigroupElapsed TimeC-RayTimed MAFFT AlignmentTimed HMMer SearchMinion7-Zip CompressionParallel BZIP2 CompressionNAS Parallel BenchmarksNAS Parallel BenchmarksJohn The RipperSmallptNAS Parallel BenchmarksTimed PHP CompilationHimeno BenchmarkNAS Parallel BenchmarksMinionCraftytestivan1

phoronixcompress-7zip: Compress Speed Testcompress-pbzip2: 256MB File Compressionx264: H.264 Video Encodingopenssl: RSA 4096-bit Performancegcrypt: CAMELLIA256-ECB Cipherjohn-the-ripper: Blowfishgraphics-magick: Local Adaptive Thresholdinggraphics-magick: Resizinghimeno: Poisson Pressure Solverc-ray: Total Timesmallpt: Global Illumination Renderer; 100 Samplescrafty: Elapsed Timehmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentminion: Quasigroupminion: Solitairenpb: EP.Bnpb: IS.Cnpb: LU.Anpb: UA.Abuild-php: Time To Compiletestivan1862317.1463.2656.65320033994399508.7993.79204113.5925.1113.07233.02389.5887.6468.994446.4418.3854.521473610.085286688.5930.2214193.5014.387.46189.90226.43139.1790.727406.0126.4338.57OpenBenchmarking.org

7-Zip Compression

OpenBenchmarking.orgMIPS, More Is Better7-Zip Compression 9.20.1Compress Speed Testtestivan13K6K9K12K15KSE +/- 14.98, N = 3SE +/- 302.29, N = 68623147361. (CXX) g++ options: -pipe -lpthread
OpenBenchmarking.orgMIPS, More Is Better7-Zip Compression 9.20.1Compress Speed Testtestivan13K6K9K12K15KMin: 8594 / Avg: 8623 / Max: 8644Min: 13395 / Avg: 14736.33 / Max: 152731. (CXX) g++ options: -pipe -lpthread

Parallel BZIP2 Compression

OpenBenchmarking.orgSeconds, Fewer Is BetterParallel BZIP2 Compression 1.0.5256MB File Compressiontestivan148121620SE +/- 0.02, N = 3SE +/- 0.44, N = 617.1410.081. (CXX) g++ options: -O2 -pthread -lpthread -lbz2
OpenBenchmarking.orgSeconds, Fewer Is BetterParallel BZIP2 Compression 1.0.5256MB File Compressiontestivan148121620Min: 17.1 / Avg: 17.14 / Max: 17.17Min: 9.33 / Avg: 10.08 / Max: 11.91. (CXX) g++ options: -O2 -pthread -lpthread -lbz2

x264

OpenBenchmarking.orgFrames Per Second, More Is Betterx264 2011-12-06H.264 Video Encodingtest1428425670SE +/- 0.11, N = 363.26

OpenSSL

OpenBenchmarking.orgSigns Per Second, More Is BetterOpenSSL 1.0.0eRSA 4096-bit Performancetest1326395265SE +/- 0.05, N = 456.651. (CC) gcc options: -m64 -O3 -lssl -lcrypto -ldl

Gcrypt Library

OpenBenchmarking.orgMicroseconds, Fewer Is BetterGcrypt Library 1.4.4CAMELLIA256-ECB Ciphertest7001400210028003500SE +/- 5.77, N = 332001. (CC) gcc options: -O2 -fvisibility=hidden

John The Ripper

OpenBenchmarking.orgReal C/S, More Is BetterJohn The Ripper 1.7.9Test: Blowfishtestivan111002200330044005500SE +/- 2.08, N = 3SE +/- 61.84, N = 3339952861. (CC) gcc options: -fopenmp -lcrypt
OpenBenchmarking.orgReal C/S, More Is BetterJohn The Ripper 1.7.9Test: Blowfishtestivan19001800270036004500Min: 3396 / Avg: 3399 / Max: 3403Min: 5162 / Avg: 5285.67 / Max: 53491. (CC) gcc options: -fopenmp -lcrypt

GraphicsMagick

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.12Operation: Local Adaptive Thresholdingtest1020304050SE +/- 0.00, N = 3431. (CC) gcc options: -std=gnu99 -fopenmp -O2 -pthread -llcms -ltiff -lfreetype -ljasper -ljpeg -lwmflite -lXext -lSM -lICE -lX11 -lbz2 -lxml2 -lz -lm -lrt -lpthread

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.12Operation: Resizingtest20406080100SE +/- 0.33, N = 3991. (CC) gcc options: -std=gnu99 -fopenmp -O2 -pthread -llcms -ltiff -lfreetype -ljasper -ljpeg -lwmflite -lXext -lSM -lICE -lX11 -lbz2 -lxml2 -lz -lm -lrt -lpthread

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solvertestivan1150300450600750SE +/- 1.26, N = 3SE +/- 6.27, N = 3508.79688.591. (CC) gcc options: -O3
OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solvertestivan1120240360480600Min: 506.41 / Avg: 508.79 / Max: 510.71Min: 681.49 / Avg: 688.59 / Max: 701.11. (CC) gcc options: -O3

C-Ray

This is a test of C-Ray, a simple raytracer designed to test the floating-point CPU performance. This test is multi-threaded (16 threads per core), will shoot 8 rays per pixel for anti-aliasing, and will generate a 1600 x 1200 image. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total Timetestivan120406080100SE +/- 0.01, N = 3SE +/- 0.41, N = 393.7930.221. (CC) gcc options: -lm -lpthread -O3
OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total Timetestivan120406080100Min: 93.77 / Avg: 93.79 / Max: 93.81Min: 29.69 / Avg: 30.22 / Max: 31.031. (CC) gcc options: -lm -lpthread -O3

Smallpt

Smallpt is a C++ global illumination renderer written in less than 100 lines of code. Global illumination is done via unbiased Monte Carlo path tracing and there is multi-threading support via the OpenMP library. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSmallpt 1.0Global Illumination Renderer; 100 Samplestestivan14080120160200SE +/- 0.00, N = 3SE +/- 0.67, N = 32041411. (CXX) g++ options: -fopenmp
OpenBenchmarking.orgSeconds, Fewer Is BetterSmallpt 1.0Global Illumination Renderer; 100 Samplestestivan14080120160200Min: 204 / Avg: 204 / Max: 204Min: 140 / Avg: 140.67 / Max: 1421. (CXX) g++ options: -fopenmp

Crafty

OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed Timetestivan1306090120150SE +/- 0.23, N = 3SE +/- 0.44, N = 3113.5993.501. (CC) gcc options: -lstdc++ -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed Timetestivan120406080100Min: 113.3 / Avg: 113.59 / Max: 114.05Min: 92.63 / Avg: 93.5 / Max: 93.941. (CC) gcc options: -lstdc++ -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchtestivan1612182430SE +/- 0.15, N = 3SE +/- 0.22, N = 525.1114.381. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchtestivan1612182430Min: 24.81 / Avg: 25.11 / Max: 25.27Min: 13.58 / Avg: 14.38 / Max: 14.821. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmenttestivan13691215SE +/- 0.00, N = 3SE +/- 0.16, N = 613.077.461. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmenttestivan148121620Min: 13.07 / Avg: 13.07 / Max: 13.07Min: 7.17 / Avg: 7.46 / Max: 8.031. (CC) gcc options: -O3 -lm -lpthread

Minion

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12Benchmark: Quasigrouptestivan150100150200250SE +/- 1.68, N = 3SE +/- 0.72, N = 3233.02189.90-lboost_iostreams-mt-lboost_iostreams1. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lz -lbz2
OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12Benchmark: Quasigrouptestivan14080120160200Min: 230.8 / Avg: 233.02 / Max: 236.32Min: 188.59 / Avg: 189.9 / Max: 191.071. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lz -lbz2

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12Benchmark: Solitairetestivan180160240320400SE +/- 56.11, N = 6SE +/- 0.99, N = 3389.58226.43-lboost_iostreams-mt-lboost_iostreams1. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lz -lbz2
OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12Benchmark: Solitairetestivan170140210280350Min: 262.16 / Avg: 389.58 / Max: 516.91Min: 225.2 / Avg: 226.43 / Max: 228.391. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lz -lbz2

NAS Parallel Benchmarks

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: EP.Btestivan1306090120150SE +/- 0.38, N = 3SE +/- 5.30, N = 687.64139.171. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: EP.Btestivan1306090120150Min: 87.01 / Avg: 87.64 / Max: 88.33Min: 119.28 / Avg: 139.17 / Max: 149.91. (F9X) gfortran options: -fopenmp

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: IS.Ctestivan120406080100SE +/- 0.98, N = 6SE +/- 0.53, N = 368.9990.721. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: IS.Ctestivan120406080100Min: 67.4 / Avg: 68.99 / Max: 72.1Min: 89.71 / Avg: 90.72 / Max: 91.511. (F9X) gfortran options: -fopenmp

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: LU.Atestivan116003200480064008000SE +/- 16.48, N = 3SE +/- 852.31, N = 64446.447406.011. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: LU.Atestivan113002600390052006500Min: 4428.86 / Avg: 4446.44 / Max: 4479.38Min: 4573.22 / Avg: 7406.01 / Max: 8875.051. (F9X) gfortran options: -fopenmp

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: UA.Atestivan1612182430SE +/- 0.12, N = 3SE +/- 2.68, N = 618.3826.431. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: UA.Atestivan1612182430Min: 18.25 / Avg: 18.38 / Max: 18.61Min: 15.41 / Avg: 26.43 / Max: 30.521. (F9X) gfortran options: -fopenmp

Timed PHP Compilation

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed PHP Compilation 5.2.9Time To Compiletestivan11224364860SE +/- 0.45, N = 3SE +/- 0.55, N = 354.5238.571. (CC) gcc options: -O2 -pedantic -ldl -lz -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed PHP Compilation 5.2.9Time To Compiletestivan11122334455Min: 53.7 / Avg: 54.52 / Max: 55.24Min: 37.98 / Avg: 38.57 / Max: 39.661. (CC) gcc options: -O2 -pedantic -ldl -lz -lm