256 Core AMD Opteron, 1 Terabyte RAM

Tests by Michael Larabel on PTS.

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256 Core AMD + 1TB RAM
December 02 2013
 
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December 01 2013
 
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256 Core AMD Opteron, 1 Terabyte RAMProcessorMotherboardChipsetMemoryDiskGraphicsNetworkAudioMonitorOSKernelCompilerFile-SystemDisplay Driver256 Core AMD + 1TB RAMComparison test32 x AMD Opteron 6380 @ 2.50GHz (256 Cores)Supermicro H8QGLAMD ATI RD890 + SB7x0/SB8x0/SB9x01032192MB2 x 256GB Samsung SSD 840 + 2000GB Seagate ST2000DM001-1CH1Matrox s MGA G200eW WPCM450Intel 82576 Gigabit ConnectionCentOS 6.43.10.10-advanced+ (x86_64)GCC 4.4.7 20120313 + Open64 4.5.2.1 + PGI C-C++ WorkstationnfsIntel Core i7 860 @ 2.79GHz (8 Cores)Intel DP55KGIntel Core DMI12288MB256GB Samsung SSD 840 + 5 x 2000GB Western Digital WD2003FYYS-0 + 4001GB My Book 1230NVIDIA GeForce 7950 GTRealtek ALC889NEC LCD1560VIntel 82578DC Gigabit ConnectionUbuntu 13.103.11.0-13-generic (x86_64)modesetting 0.8.0GCC 4.8ext4OpenBenchmarking.orgCompiler Details- 256 Core AMD + 1TB RAM: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-ppl --with-tune=generic - Comparison test: --build=x86_64-linux-gnu --disable-browser-plugin --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v System Details- 256 Core AMD + 1TB RAM: SELinux: Enabled.Processor Details- Comparison test: Scaling Governor: acpi- freq ondemand

256 Core AMD + 1TB RAM vs. Comparison test ComparisonPhoronix Test SuiteBaseline+109.9%+109.9%+219.8%+219.8%+329.7%+329.7%+439.6%+439.6%439.7%233.1%108.7%70%69.2%M.S.AP.P.SN.6.1.C.F.RP.D.SC.F.DTimed MAFFT AlignmentHimeno BenchmarkFFTETimed HMMer SearchDolfyn256 Core AMD + 1TB RAMComparison test

256 Core AMD Opteron, 1 Terabyte RAMdolfyn: Computational Fluid Dynamicsffte: N=64, 1D Complex FFT Routinehmmer: Pfam Database Searchmafft: Multiple Sequence Alignmenthimeno: Poisson Pressure Solver256 Core AMD + 1TB RAMComparison test57.742139.3327.7946.41418.3934.124465.1216.358.601393.59OpenBenchmarking.org

Dolfyn

Dolfyn is a Computational Fluid Dynamics (CFD) code of modern numerical simulation techniques. The Dolfyn test profile measures the execution time of the bundled computational fluid dynamics demos that are bundled with Dolfyn. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterDolfyn 0.527Computational Fluid Dynamics256 Core AMD + 1TB RAMComparison test1326395265SE +/- 0.06, N = 3SE +/- 0.14, N = 357.7434.12
OpenBenchmarking.orgSeconds, Fewer Is BetterDolfyn 0.527Computational Fluid Dynamics256 Core AMD + 1TB RAMComparison test1122334455Min: 57.63 / Avg: 57.74 / Max: 57.82Min: 33.89 / Avg: 34.12 / Max: 34.37

FFTE

FFTE is a package by Daisuke Takahashi to compute Discrete Fourier Transforms of 1-, 2- and 3- dimensional sequences of length (2^p)*(3^q)*(5^r). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 5.0Test: N=64, 1D Complex FFT Routine256 Core AMD + 1TB RAMComparison test10002000300040005000SE +/- 31.51, N = 6SE +/- 29.22, N = 32139.334465.12-pthread -lmpi_f90 -lmpi_f77 -lmpi -ldl -lm -lnuma -lnsl -lutil-lmpichf90 -lmpich -lopa -lmpl -lcr -lpthread1. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp -lrt
OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 5.0Test: N=64, 1D Complex FFT Routine256 Core AMD + 1TB RAMComparison test8001600240032004000Min: 1987.4 / Avg: 2139.33 / Max: 2192.13Min: 4414.84 / Avg: 4465.12 / Max: 4516.061. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp -lrt

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search256 Core AMD + 1TB RAMComparison test714212835SE +/- 3.41, N = 6SE +/- 0.02, N = 327.7916.351. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search256 Core AMD + 1TB RAMComparison test612182430Min: 20.53 / Avg: 27.79 / Max: 39.77Min: 16.31 / Avg: 16.35 / Max: 16.391. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment256 Core AMD + 1TB RAMComparison test1122334455SE +/- 2.39, N = 6SE +/- 0.18, N = 646.418.601. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment256 Core AMD + 1TB RAMComparison test918273645Min: 39.57 / Avg: 46.41 / Max: 53.08Min: 8.11 / Avg: 8.6 / Max: 9.171. (CC) gcc options: -O3 -lm -lpthread

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solver256 Core AMD + 1TB RAMComparison test30060090012001500SE +/- 0.77, N = 3SE +/- 0.80, N = 3418.391393.591. (CC) gcc options: -O3
OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solver256 Core AMD + 1TB RAMComparison test2004006008001000Min: 416.95 / Avg: 418.39 / Max: 419.57Min: 1392 / Avg: 1393.59 / Max: 1394.591. (CC) gcc options: -O3