computational_biology

4 x Intel Xeon X7560 testing with a Dell 0P658H and Matrox s MGA G200eW WPCM450 on Ubuntu 12.04 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/1309102-RAFD-130910694.

computational_biologyProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionIntel Xeon X75604 x Intel Xeon X7560 @ 2.26GHz (64 Cores)Dell 0P658HIntel 5520/5500/X58 + ICH10258048MB215GB PERC H700 + 1689GB PERC H700 + 1690GB PERC H700Matrox s MGA G200eW WPCM450Broadcom NetXtreme II BCM5709 GigabitUbuntu 12.043.2.0-38-generic (x86_64)GCC 4.6 + Clang 3.0-6ubuntu3ext4640x480OpenBenchmarking.org- --build=x86_64-linux-gnu --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-arch-32=i686 --with-tune=generic -v

computational_biologyhmmer: Pfam Database Searchmafft: Multiple Sequence AlignmentIntel Xeon X756013.4532.01OpenBenchmarking.org

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchIntel Xeon X75603691215SE +/- 0.05, N = 312.481. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

Multiple Sequence Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentIntel Xeon X7560714212835SE +/- 0.56, N = 632.011. (CC) gcc options: -O3 -lm -lpthread

Phoronix Test Suite v10.8.4