NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign.
To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark namd.
OpenBenchmarking.org metrics for this test profile configuration based on 905 public results since 20 August 2020 with the latest data as of 17 January 2021.
Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.
Based on OpenBenchmarking.org data, the selected test / test configuration (NAMD 2.14 - ATPase Simulation - 327,506 Atoms) has an average run-time of 7 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.
Based on public OpenBenchmarking.org results, the selected test / test configuration has an average standard deviation of 0.2%.
3 Systems - 191 Benchmark Results |
AMD Ryzen 3 2200G - ASUS PRIME B350M-E - AMD Raven Ubuntu 20.10 - 5.8.0-38-generic - GNOME Shell 3.38.1 |
2 Systems - 17 Benchmark Results |
2 x Intel Celeron J3455 - Intel 440BX - Intel 440BX Ubuntu 18.04 - 4.15.0-130-generic - GCC 7.5.0 |
1 System - 1 Benchmark Result |
AMD Ryzen 7 5800X 8-Core - ASUS ROG STRIX X470-F GAMING - AMD Starship Ubuntu 20.04 - 5.10.0-051000-generic - GNOME Shell 3.36.4 |
1 System - 1 Benchmark Result |
AMD Ryzen 7 1800X Eight-Core - ASUS ROG STRIX X470-F GAMING - AMD 17h Ubuntu 20.04 - 5.8.0-38-generic - GNOME Shell 3.36.4 |
2 Systems - 1 Benchmark Result |
Intel Core i5-9300H - LENOVO LNVNB161216 - Intel Cannon Lake PCH Arch rolling - 5.10.3-106-tkg-MuQSS - KDE Plasma 5.20.5 |
1 System - 1 Benchmark Result |
Intel Core i5-9300H - LENOVO LNVNB161216 - Intel Cannon Lake PCH Arch rolling - 5.10.3-106-tkg-MuQSS - KDE Plasma 5.20.5 |
1 System - 14 Benchmark Results |
AMD Ryzen 9 3900X 12-Core - ASUS PRIME X570-PRO - AMD Starship EndeavourOS rolling - 5.10.6-vd-2.4 - Xfce 4.16 |
1 System - 14 Benchmark Results |
AMD Ryzen 9 3900X 12-Core - ASUS PRIME X570-PRO - AMD Starship EndeavourOS rolling - 5.10.6-vd-2.1 - Xfce 4.16 |
1 System - 14 Benchmark Results |
AMD Ryzen 9 3900X 12-Core - ASUS PRIME X570-PRO - AMD Starship EndeavourOS rolling - 5.10.6-vd-2.2 - Xfce 4.16 |
1 System - 14 Benchmark Results |
AMD Ryzen 9 3900X 12-Core - ASUS PRIME X570-PRO - AMD Starship EndeavourOS rolling - 5.10.6-vd-2.4 - Xfce 4.16 |
1 System - 3 Benchmark Results |
AMD Ryzen Threadripper 3960X 24-Core - Intel 440BX - 1 x 8192 MB 0MHz VMW-8192MB Microsoft Windows 10 Home Build 18362 - 10.0 - 8.16.7.5 |
1 System - 3 Benchmark Results |
AMD Ryzen Threadripper 3960X 24-Core - Intel 440BX - 1 x 16384 MB 0MHz Microsoft Windows 10 Home Build 17134 - 10.0 - 8.16.7.5 |
3 Systems - 268 Benchmark Results |
Intel Core i5-2520M - HP 161C - Intel 2nd Generation Core DRAM Ubuntu 18.04 - 4.18.0-20-generic - GNOME Shell 3.28.3 |
11 Systems - 217 Benchmark Results |
AMD Ryzen 5 3600X 6-Core - ASUS ROG CROSSHAIR VIII HERO - AMD Starship Ubuntu 20.04 - 5.9.0-050900-generic - GNOME Shell 3.36.4 |
4 Systems - 99 Benchmark Results |
VirtualApple - Apple Mac mini - 8GB macOS 11.0 - 20.1.0 - OpenCL 1.2 |
3 Systems - 174 Benchmark Results |
Intel Core i9-10900K - Gigabyte Z490 AORUS MASTER - Intel Comet Lake PCH Fedora 32 - 5.8.11-200.fc32.x86_64 - GNOME Shell 3.36.6 |
2 Systems - 403 Benchmark Results |
Intel Core i9-10900K - Gigabyte Z490 AORUS MASTER - Intel Comet Lake PCH Ubuntu 20.04 - 5.4.0-48-generic - GNOME Shell 3.36.4 |
3 Systems - 11 Benchmark Results |
AMD Ryzen 7 3800XT 8-Core - ASRock X570 Pro4 - AMD Starship Ubuntu 20.04 - 5.4.0-42-generic - GNOME Shell 3.36.1 |
3 Systems - 406 Benchmark Results |
AMD Ryzen 9 3900XT 12-Core - MSI MEG X570 GODLIKE - AMD Starship Ubuntu 20.04 - 5.4.0-48-generic - GNOME Shell 3.36.4 |
Featured Kernel Comparison |
Intel Core i5-9400F - MSI B360M GAMING PLUS - Intel Cannon Lake PCH Ubuntu 20.04 - 5.8.3-050803-generic - GNOME Shell 3.36.0 |
Featured Kernel Comparison |
AMD Ryzen 7 1700 Eight-Core - MSI B350 TOMAHAWK - AMD 17h Ubuntu 19.10 - 5.9.0-050900rc2-generic - GNOME Shell 3.34.1 |
Featured Kernel Comparison |
AMD Ryzen 3 3300X 4-Core - MSI B350M GAMING PRO - AMD Starship Ubuntu 20.04 - 5.9.0-050900rc4daily20200911-generic - GNOME Shell 3.36.4 |
3 Systems - 202 Benchmark Results |
Intel Core i7-7700K - MSI Z270-A PRO - Intel Xeon E3-1200 v6 Ubuntu 20.04 - 5.9.0-050900rc8daily20201011-generic - GNOME Shell 3.36.4 |
3 Systems - 100 Benchmark Results |
AMD Ryzen Threadripper 3990X 64-Core - System76 Thelio Major - AMD Starship Ubuntu 20.04 - 5.4.0-47-generic - GNOME Shell 3.36.4 |