Xcompact3d Incompact3d

Xcompact3d Incompact3d is a Fortran-MPI based, finite difference high-performance code for solving the incompressible Navier-Stokes equation and as many as you need scalar transport equations.

To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark incompact3d.

Project Site

github.com

Test Created

17 September 2020

Last Updated

18 March 2021

Test Maintainer

Michael Larabel 

Test Type

Processor

Average Install Time

1 Minute, 1 Second

Average Run Time

32 Minutes

Test Dependencies

Fortran + OpenMPI + FFTW + C/C++ Compiler Toolchain

Accolades

5k+ Downloads

Supported Platforms


Public Result UploadsReported Installs*Test Completions*OpenBenchmarking.orgEventsXcompact3d Incompact3d Popularity Statisticspts/incompact3d2020.092020.102020.112020.122021.012021.022021.032021.042021.052004006008001000
* Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting while running benchmarks from an Internet-connected platform.
Data current as of Sat, 08 May 2021 08:09:19 GMT.
input.i3d 129 Cells Per Direction37.3%input.i3d 192 Cells Per Direction11.9%input.i3d 193 Cells Per Direction35.5%X3D-benchmarking input.i3d15.3%Input Option PopularityOpenBenchmarking.org

Revision History

pts/incompact3d-2.0.2   [View Source]   Thu, 18 Mar 2021 05:40:41 GMT
Use 193 option rather than 192.

pts/incompact3d-2.0.1   [View Source]   Wed, 17 Mar 2021 09:22:38 GMT
Add a 192 cell per direction option for HEDT systems.

pts/incompact3d-2.0.0   [View Source]   Wed, 17 Mar 2021 08:12:12 GMT
Update against Xcompact3D/Incompact3D from GitHub, use X3D-benchmarking input, add lower 129 cell option too. Per https://github.com/phoronix-test-suite/phoronix-test-suite/issues/512

pts/incompact3d-1.0.0   [View Source]   Thu, 17 Sep 2020 16:44:55 GMT
Add Incompact3D xcompact3d solver benchmark.

Suites Using This Test

Molecular Dynamics

Scientific Computing

MPI Benchmarks

HPC - High Performance Computing


Performance Metrics

Analyze Test Configuration:

Xcompact3d Incompact3d 2021-03-11

Input: input.i3d 193 Cells Per Direction

OpenBenchmarking.org metrics for this test profile configuration based on 311 public results since 17 March 2021 with the latest data as of 8 May 2021.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component
Percentile Rank
# Matching Public Results
Seconds (Average)
Mid-Tier
75th
> 23
Median
50th
118
49th
10
119 +/- 1
44th
5
140 +/- 10
35th
3
146 +/- 2
35th
4
146 +/- 1
35th
7
146 +/- 1
31st
3
150 +/- 1
27th
3
153 +/- 3
Low-Tier
25th
> 156
19th
3
166 +/- 2
16th
3
178 +/- 2
12th
4
193 +/- 3
10th
3
220 +/- 1
6th
3
246 +/- 1
5th
4
255 +/- 1
4th
3
267 +/- 1
2nd
3
338 +/- 4
1st
3
449 +/- 4
OpenBenchmarking.orgDistribution Of Public Results - Input: input.i3d 193 Cells Per Direction308 Results Range From 9 To 454 Seconds93051729311413515617719821924026128230332434536638740842945047120406080100

Based on OpenBenchmarking.org data, the selected test / test configuration (Xcompact3d Incompact3d 2021-03-11 - Input: input.i3d 193 Cells Per Direction) has an average run-time of 6 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

OpenBenchmarking.orgMinutesTime Required To Complete BenchmarkInput: input.i3d 193 Cells Per DirectionRun-Time510152025Min: 1 / Avg: 5.36 / Max: 23

Based on public OpenBenchmarking.org results, the selected test / test configuration has an average standard deviation of 0.3%.

OpenBenchmarking.orgPercent, Fewer Is BetterAverage Deviation Between RunsInput: input.i3d 193 Cells Per DirectionDeviation246810Min: 0 / Avg: 0.27 / Max: 3

Does It Scale Well With Increasing Cores?

No, based on the automated analysis of the collected public benchmark data, this test / test settings does not generally scale well with increasing CPU core counts. Data based on publicly available results for this test / test settings, separated by vendor, result divided by the reference CPU clock speed, grouped by matching physical CPU core count, and normalized against the smallest core count tested from each vendor for each CPU having a sufficient number of test samples and statistically significant data.

IntelAMDOpenBenchmarking.orgRelative Core Scaling To BaseXcompact3d Incompact3d CPU Core ScalingInput: input.i3d 193 Cells Per Direction46812162432643691215

Notable Instruction Set Usage

Notable instruction set extensions supported by this test, based on an automatic analysis by the Phoronix Test Suite / OpenBenchmarking.org analytics engine.

Instruction Set
Support
Instructions Detected
SSE2 (SSE2)
Used by default on supported hardware.
 
SUBSD CVTSI2SD DIVSD COMISD MOVAPD XORPD MULSD ADDSD CVTTSD2SI UCOMISD ANDPD SQRTSD CVTSD2SS CVTSS2SD MAXSD MINSD
Last automated analysis: 30 January 2021

This test profile binary relies on the shared libraries libmpi.so.40, libopen-rte.so.40, libopen-pal.so.40, libhwloc.so.15, libdl.so.2, libevent-2.1.so.7, libutil.so.1, libgfortran.so.5, libm.so.6, librt.so.1, libz.so.1, libquadmath.so.0, libpthread.so.0, libc.so.6, libudev.so.1.

Recent Test Results

OpenBenchmarking.org Results Compare

3 Systems - 99 Benchmark Results

AMD Ryzen Threadripper 2990WX 32-Core - ASUS ROG ZENITH EXTREME - AMD 17h

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2 Systems - 127 Benchmark Results

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Ubuntu 20.04 - 5.9.0-050900rc6-generic - GNOME Shell 3.36.4

8 Systems - 188 Benchmark Results

2 x Intel Xeon Platinum 8380 - Intel M50CYP2SB2U - Intel Device 0998

Ubuntu 20.04 - 5.11.0-051100-generic - GNOME Shell 3.36.4

1 System - 732 Benchmark Results

2 x Intel Xeon Platinum 8380 - Intel M50CYP2SB2U - Intel Device 0998

Ubuntu 20.04 - 5.11.6-051106-generic - GNOME Shell 3.36.4

3 Systems - 101 Benchmark Results

Intel Core i9-10980XE - ASRock X299 Steel Legend - Intel Sky Lake-E DMI3 Registers

Ubuntu 20.10 - 5.8.0-50-generic - GNOME Shell 3.38.1

2 Systems - 102 Benchmark Results

Intel Core i9-10980XE - ASRock X299 Steel Legend - Intel Sky Lake-E DMI3 Registers

Clear Linux OS 34530 - 5.10.31-1033.native - GNOME Shell 3.38.4

1 System - 103 Benchmark Results

Intel Core i9-10980XE - ASRock X299 Steel Legend - Intel Sky Lake-E DMI3 Registers

Clear Linux OS 34530 - 5.10.31-1033.native - GNOME Shell 3.38.4

3 Systems - 176 Benchmark Results

Intel Core i9-11900K - ASUS ROG MAXIMUS XIII HERO - Intel Device 43ef

Ubuntu 20.10 - 5.12.0-rc7-dyn-preempt - GNOME Shell 3.38.1

1 System - 42 Benchmark Results

AMD Ryzen 9 5950X 16-Core - ASRock X570M Pro4 - 64GB

Ubuntu 20.04.1 LTS - 5.11.14-200.fc33.x86_64 - NVIDIA

1 System - 136 Benchmark Results

AMD EPYC 7763 64-Core - Supermicro H12SSL-i v1.01 - AMD Starship

Ubuntu 20.04 - 5.4.0-72-generic - GNOME Shell 3.36.7

Most Popular Test Results

OpenBenchmarking.org Results Compare

4 Systems - 20 Benchmark Results

AMD Ryzen 5 5600X 6-Core - ASUS TUF GAMING B550M-PLUS - AMD Starship

Ubuntu 20.10 - 5.8.0-45-generic - GNOME Shell 3.38.1

3 Systems - 20 Benchmark Results

AMD Ryzen Threadripper 3970X 32-Core - ASUS ROG ZENITH II EXTREME - AMD Starship

Ubuntu 20.10 - 5.11.0-rc6-phx - GNOME Shell 3.38.1

3 Systems - 22 Benchmark Results

Intel Core i7-8700K - ASUS TUF Z370-PLUS GAMING - Intel 8th Gen Core

Ubuntu 20.04 - 5.9.0-050900rc6daily20200923-generic - GNOME Shell 3.36.4

3 Systems - 101 Benchmark Results

Intel Core i9-10980XE - ASRock X299 Steel Legend - Intel Sky Lake-E DMI3 Registers

Clear Linux OS 34530 - 5.10.31-1033.native - GNOME Shell 3.38.4

2 Systems - 95 Benchmark Results

2 x Intel Xeon Platinum 8280 - GIGABYTE MD61-SC2-00 v01000100 - Intel Sky Lake-E DMI3 Registers

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3 Systems - 15 Benchmark Results

AMD Ryzen Threadripper 2950X 16-Core - MSI MEG X399 CREATION - AMD 17h

Debian 10 - 5.8.1-050801-generic - GNOME Shell 3.30.2

4 Systems - 10 Benchmark Results

Intel Core i9-10900K - Gigabyte Z490 AORUS MASTER - Intel Comet Lake PCH

Ubuntu 20.10 - 5.11.0-051100rc2daily20210106-generic - GNOME Shell 3.38.1

4 Systems - 150 Benchmark Results

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