ECP-CANDLE

The CANDLE benchmark codes implement deep learning architectures relevant to problems in cancer. These architectures address problems at different biological scales, specifically problems at the molecular, cellular and population scales.

To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark ecp-candle.

Project Site

github.com

Test Created

12 August 2020

Last Updated

23 August 2020

Test Maintainer

Michael Larabel 

Test Type

System

Average Install Time

2 Minutes, 57 Seconds

Average Run Time

10 Minutes, 19 Seconds

Test Dependencies

Python

Accolades

5k+ Downloads

Supported Platforms


Public Result UploadsReported Installs*Test Completions*OpenBenchmarking.orgEventsECP-CANDLE Popularity Statisticspts/ecp-candle2020.082020.092020.102020.112020.122021.012021.022021.032021.042021.05120240360480600
* Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting while running benchmarks from an Internet-connected platform.
Data current as of Sat, 08 May 2021 14:28:24 GMT.
P1B234.9%P3B133.5%P3B231.6%Benchmark Option PopularityOpenBenchmarking.org

Revision History

pts/ecp-candle-1.0.1   [View Source]   Sun, 23 Aug 2020 14:20:46 GMT
Drop P2B1 option as it seems borked for some systems.

pts/ecp-candle-1.0.0   [View Source]   Wed, 12 Aug 2020 18:15:02 GMT
Initial commit of CANDLE cancer deep learning benchmark.

Suites Using This Test

Machine Learning

HPC - High Performance Computing


Performance Metrics

Analyze Test Configuration:

ECP-CANDLE 0.3

Benchmark: P1B2

OpenBenchmarking.org metrics for this test profile configuration based on 302 public results since 12 August 2020 with the latest data as of 3 May 2021.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component
Percentile Rank
# Matching Public Results
Seconds (Average)
95th
5
33.5 +/- 1.1
93rd
7
33.6 +/- 0.8
92nd
7
33.8 +/- 0.7
88th
5
34.1 +/- 2.3
87th
3
34.7 +/- 1.7
86th
4
34.9 +/- 0.6
85th
6
35.1 +/- 2.0
83rd
6
35.4 +/- 0.7
77th
6
37.1 +/- 0.7
Mid-Tier
75th
> 37.6
75th
4
37.7 +/- 0.8
72nd
10
38.0 +/- 1.0
72nd
3
38.3 +/- 3.1
72nd
6
38.3 +/- 0.6
72nd
10
38.4 +/- 2.1
72nd
3
38.5 +/- 1.2
65th
3
39.9 +/- 0.4
63rd
4
40.2 +/- 0.5
63rd
8
40.2 +/- 0.5
Median
50th
41.3
49th
9
41.7 +/- 0.5
49th
9
41.8 +/- 0.9
49th
3
41.8 +/- 1.1
48th
3
42.0 +/- 1.3
48th
5
42.1 +/- 0.7
48th
8
42.1 +/- 0.9
33rd
3
43.4 +/- 0.3
32nd
6
43.6 +/- 0.9
32nd
6
43.7 +/- 1.1
31st
6
43.9 +/- 1.0
29th
5
44.0 +/- 0.6
27th
4
44.2 +/- 1.1
27th
3
44.3 +/- 0.5
Low-Tier
25th
> 44.3
23rd
6
44.5 +/- 1.1
23rd
4
44.6 +/- 0.8
21st
6
44.7 +/- 1.0
19th
9
44.9 +/- 1.0
19th
8
44.9 +/- 0.8
8th
3
45.9 +/- 0.3
4th
3
50.9 +/- 0.6
2nd
3
53.7 +/- 1.0
1st
3
74.1 +/- 1.2
OpenBenchmarking.orgDistribution Of Public Results - Benchmark: P1B2302 Results Range From 31 To 83 Seconds31364146515661667176818691306090120150

Based on OpenBenchmarking.org data, the selected test / test configuration (ECP-CANDLE 0.3 - Benchmark: P1B2) has an average run-time of 2 minutes. By default this test profile is set to run at least 1 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

OpenBenchmarking.orgMinutesTime Required To Complete BenchmarkBenchmark: P1B2Run-Time246810Min: 1 / Avg: 1 / Max: 1

Does It Scale Well With Increasing Cores?

No, based on the automated analysis of the collected public benchmark data, this test / test settings does not generally scale well with increasing CPU core counts. Data based on publicly available results for this test / test settings, separated by vendor, result divided by the reference CPU clock speed, grouped by matching physical CPU core count, and normalized against the smallest core count tested from each vendor for each CPU having a sufficient number of test samples and statistically significant data.

IntelAMDOpenBenchmarking.orgRelative Core Scaling To BaseECP-CANDLE CPU Core ScalingBenchmark: P1B2468121624320.4250.851.2751.72.125

Recent Test Results

OpenBenchmarking.org Results Compare

5 Systems - 59 Benchmark Results

2 x Intel Xeon Platinum 8380 - Intel M50CYP2SB2U - Intel Device 0998

Ubuntu 20.04 - 5.11.0-051100-generic - GNOME Shell 3.36.4

1 System - 92 Benchmark Results

AMD Ryzen 5 5600X 6-Core - ASRock X570 Phantom Gaming-ITX/TB3 - AMD Device 1480

Ubuntu 18.04 - 5.4.0-70-generic - GNOME Shell 3.28.4

1 System - 241 Benchmark Results

AMD Ryzen 7 3700X 8-Core - ASRock X570 Phantom Gaming-ITX/TB3 - AMD Starship

Ubuntu 20.10 - 5.8.0-41-lowlatency - X Server 1.20.9

3 Systems - 6 Benchmark Results

AMD Ryzen 7 5800X 8-Core - ASRock X570 Pro4 - AMD Starship

Ubuntu 20.10 - 5.11.0-rc1-phx - GNOME Shell 3.38.1

3 Systems - 10 Benchmark Results

AMD Ryzen 9 5900X 12-Core - ASUS ROG CROSSHAIR VIII HERO - AMD Starship

Ubuntu 20.10 - 5.10.0-051000daily20201222-generic - GNOME Shell 3.38.1

1 System - 92 Benchmark Results

AMD Ryzen 9 5900X 12-Core - ASRock X570 Taichi - AMD Starship

Ubuntu 20.04 - 5.4.0-53-generic - GNOME Shell 3.36.4

7 Systems - 349 Benchmark Results

AMD Ryzen 5 5600X 6-Core - ASRock X570 Pro4 - AMD Starship

Ubuntu 20.10 - 5.8.0-26-generic - GNOME Shell 3.38.1

Most Popular Test Results

OpenBenchmarking.org Results Compare

3 Systems - 138 Benchmark Results

Intel Xeon E3-1245 v5 - MSI C236A WORKSTATION - Intel Xeon E3-1200 v5

Ubuntu 20.04 - 5.8.13-050813-generic - GNOME Shell 3.36.2

3 Systems - 44 Benchmark Results

Intel Core i9-9900K - ASRock Z390M Pro4 - Intel Cannon Lake PCH

Ubuntu 20.04 - 5.9.0-050900rc1daily20200819-generic - GNOME Shell 3.36.4

3 Systems - 259 Benchmark Results

AMD EPYC 7F72 24-Core - ASRockRack EPYCD8 - AMD Starship

Ubuntu 20.04 - 5.9.0-rc4-pts - GNOME Shell 3.36.4

7 Systems - 84 Benchmark Results

2 x AMD EPYC 7262 8-Core - Supermicro H11DSi-NT v2.00 - AMD Starship

Ubuntu 20.04 - 5.8.0-050800rc6daily20200721-generic - GNOME Shell 3.36.1

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