mafft-1.6.2run

2 x Intel Xeon E5-2620 v2 testing with a ASUS Z9PE-D8 WS (5503 BIOS) and ASPEED on CentOS Stream 9 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2407256-NE-MAFFT162R63.

mafft-1.6.2runProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkMonitorOSKernelDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutiondebugNoGVNO2NoGVNO3OptNoSimplO2OptNoSimplO3OptSimplO2OptSimplO32 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads)ASUS Z9PE-D8 WS (5503 BIOS)Intel Xeon E7 v2/Xeon32GB256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00PASPEEDRealtek ALC8982 x Intel 82574LCentOS Stream 95.14.0-467.el9.x86_64 (x86_64)X ServerNVIDIAGCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2ext41024x7682000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850ASUS VW1905.14.0-474.el9.x86_64 (x86_64)OpenBenchmarking.orgKernel Details- Transparent Huge Pages: alwaysEnvironment Details- debug: CXXFLAGS=-O2 CFLAGS=-O2- NoGVNO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -disable-gvn=true" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -disable-gvn=true"- NoGVNO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -disable-gvn=true" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -disable-gvn=true"- OptNoSimplO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false" - OptNoSimplO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false" - OptSimplO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true" - OptSimplO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true" Compiler Details- Optimized build with assertions; Built Apr 11 2013 (07:43:48); Default target: i386-pc-linux-gnu; Host CPU: i686Processor Details- Scaling Governor: intel_cpufreq conservative - CPU Microcode: 0x42eSecurity Details- gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Unknown: No mitigations + reg_file_data_sampling: Not affected + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines; IBPB: conditional; IBRS_FW; STIBP: conditional; RSB filling; PBRSB-eIBRS: Not affected; BHI: Not affected + srbds: Not affected + tsx_async_abort: Not affected

mafft-1.6.2runmafft: Multiple Sequence Alignment - LSU RNADifferenceStandard ErrorStandard DeviationdebugNoGVNO2NoGVNO3OptNoSimplO2OptNoSimplO3OptSimplO2OptSimplO322.7531.42x0.142.44%38.9331.01x0.392.44%39.2041.00x0.422.16%38.7171.01x0.392.47%38.9171.01x0.362.25%39.0331.00x0.442.25%38.8811.01x0.362.44%OpenBenchmarking.org

Timed MAFFT Alignment

Multiple Sequence Alignment - LSU RNA

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAdebugNoGVNO2NoGVNO3OptNoSimplO2OptNoSimplO3OptSimplO2OptSimplO3918273645SE +/- 0.14, N = 15SE +/- 0.39, N = 6SE +/- 0.42, N = 4SE +/- 0.48, N = 4SE +/- 0.41, N = 5SE +/- 0.43, N = 5SE +/- 0.41, N = 522.7538.9339.2038.9339.0938.9438.661. (CC) clang options: -std=c99 -O3 -lm -lpthread

Phoronix Test Suite v10.8.5