mafft-1.6.2run

2 x Intel Xeon E5-2620 v2 testing with a ASUS Z9PE-D8 WS (5503 BIOS) and ASPEED on CentOS Stream 9 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2405075-NE-MAFFT162R03.

mafft-1.6.2runProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDisplay ServerCompilerFile-SystemScreen ResolutionNewGVNTrunkO2NewGVNTrunkO3NoGVNTrunkO2NoGVNTrunkO3GVNTrunkO2GVNTrunkO3NoPREO2NoPREO32 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads)ASUS Z9PE-D8 WS (5503 BIOS)Intel Xeon E7 v2/Xeon32GB256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00PASPEEDRealtek ALC8982 x Intel 82574LCentOS Stream 95.14.0-437.el9.x86_64 (x86_64)X ServerGCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2ext41024x768OpenBenchmarking.orgKernel Details- Transparent Huge Pages: alwaysEnvironment Details- NewGVNTrunkO2: CXXFLAGS="-O2 -mllvm -enable-newgvn" CFLAGS="-O2 -mllvm -enable-newgvn"- NewGVNTrunkO3: CXXFLAGS="-O3 -mllvm -enable-newgvn" CFLAGS="-O3 -mllvm -enable-newgvn"- NoGVNTrunkO2: CXXFLAGS=-O2 CFLAGS=-O2- NoGVNTrunkO3: CXXFLAGS=-O3 CFLAGS=-O3- GVNTrunkO2: CXXFLAGS=-O2 CFLAGS=-O2- GVNTrunkO3: CXXFLAGS=-O3 CFLAGS=-O3- NoPREO2: CXXFLAGS=-O2 CFLAGS=-O2- NoPREO3: CXXFLAGS=-O3 CFLAGS=-O3Compiler Details- Optimized build with assertions; Built Apr 11 2013 (07:43:48); Default target: i386-pc-linux-gnu; Host CPU: i686Processor Details- Scaling Governor: intel_cpufreq conservative - CPU Microcode: 0x42eSecurity Details- gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Unknown: No mitigations + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: conditional RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

mafft-1.6.2runmafft: Multiple Sequence Alignment - LSU RNADifferenceStandard ErrorStandard DeviationNewGVNTrunkO2NewGVNTrunkO3NoGVNTrunkO2NoGVNTrunkO3GVNTrunkO2GVNTrunkO3NoPREO2NoPREO338.4681.01x0.422.20%37.9581.03x0.160.71%38.6951.01x0.190.86%39.0091.00x0.160.71%38.1261.02x0.221.01%38.1051.02x0.070.31%38.0481.02x0.221.00%38.1341.02x0.090.43%OpenBenchmarking.org

Timed MAFFT Alignment

Multiple Sequence Alignment - LSU RNA

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNANewGVNTrunkO2NewGVNTrunkO3NoGVNTrunkO2NoGVNTrunkO3GVNTrunkO2GVNTrunkO3NoPREO2NoPREO3918273645SE +/- 0.42, N = 4SE +/- 0.16, N = 3SE +/- 0.19, N = 3SE +/- 0.16, N = 3SE +/- 0.22, N = 3SE +/- 0.07, N = 3SE +/- 0.22, N = 3SE +/- 0.09, N = 338.4737.9638.7039.0138.1338.1138.0538.131. (CC) clang options: -std=c99 -O3 -lm -lpthread

Phoronix Test Suite v10.8.5