SCIKIT-leaRn tests

AMD Ryzen 9 3900X 12-Core testing with a MSI X570-A PRO (MS-7C37) v3.0 (H.70 BIOS) and NVIDIA GeForce RTX 3060 on Ubuntu 24.04 via the Phoronix Test Suite. Noble python 3.12 performance vs. python compiled without frame pointers.

HTML result view exported from: https://openbenchmarking.org/result/2405056-VPA1-MERGE7223&rdt&grr.

SCIKIT-leaRn testsProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelCompilerFile-SystemScreen Resolutionnoblescikit-learn-python-disabled-fpAMD Ryzen 9 3900X 12-Core @ 3.80GHz (12 Cores / 24 Threads)MSI X570-A PRO (MS-7C37) v3.0 (H.70 BIOS)AMD Starship/Matisse2 x 16GB DDR4-3200MT/s F4-3200C16-16GVK2000GB Seagate ST2000DM006-2DM1 + 2000GB Western Digital WD20EZAZ-00G + 500GB Samsung SSD 860 + 8002GB Seagate ST8000DM004-2CX1 + 1000GB CT1000BX500SSD1 + 512GB TS512GESD310CNVIDIA GeForce RTX 3060NVIDIA GA104 HD AudioDELL P2314H + U32J59xRealtek RTL8111/8168/8211/8411Ubuntu 24.046.8.0-31-generic (x86_64)GCC 13.2.0ext41920x1080OpenBenchmarking.orgKernel Details- Transparent Huge Pages: madviseCompiler Details- noble: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-backtrace --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - scikit-learn-python-disabled-fp: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-backtrace --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-S2PGXz/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-S2PGXz/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details- Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x8701013Python Details- Python 3.12.3Security Details- gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + reg_file_data_sampling: Not affected + retbleed: Mitigation of untrained return thunk; SMT enabled with STIBP protection + spec_rstack_overflow: Mitigation of Safe RET + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines; IBPB: conditional; STIBP: always-on; RSB filling; PBRSB-eIBRS: Not affected; BHI: Not affected + srbds: Not affected + tsx_async_abort: Not affected

SCIKIT-leaRn testsscikit-learn: Isotonic / Perturbed Logarithmscikit-learn: Isotonic / Logisticscikit-learn: SAGAscikit-learn: Sparse Rand Projections / 100 Iterationsscikit-learn: SGDOneClassSVMscikit-learn: GLMscikit-learn: Covertype Dataset Benchmarkscikit-learn: Lassoscikit-learn: Isolation Forestscikit-learn: Kernel PCA Solvers / Time vs. N Samplesscikit-learn: TSNE MNIST Datasetscikit-learn: Plot Lasso Pathscikit-learn: SGD Regressionscikit-learn: Plot Hierarchicalscikit-learn: Sparsifyscikit-learn: Sample Without Replacementscikit-learn: Plot Fast KMeansscikit-learn: Hist Gradient Boosting Higgs Bosonscikit-learn: Plot Polynomial Kernel Approximationscikit-learn: Plot Neighborsscikit-learn: Feature Expansionsscikit-learn: Treescikit-learn: Hist Gradient Boostingscikit-learn: Kernel PCA Solvers / Time vs. N Componentsscikit-learn: Hist Gradient Boosting Adultscikit-learn: Hist Gradient Boosting Threadingscikit-learn: Plot Incremental PCAscikit-learn: Plot Singular Value Decompositionscikit-learn: Plot OMP vs. LARSscikit-learn: Plot Wardscikit-learn: MNIST Datasetscikit-learn: Text Vectorizersscikit-learn: LocalOutlierFactorscikit-learn: 20 Newsgroups / Logistic Regressionscikit-learn: Hist Gradient Boosting Categorical Onlyscikit-learn: Glmnetnoblescikit-learn-python-disabled-fp1787.7111435.273873.257557.985328.938282.676375.954351.023300.663266.450259.758232.39783.045207.115130.297180.105172.97761.363155.494144.444135.12148.325117.08970.231111.830111.843102.78696.61470.08753.99065.70665.74053.38837.58820.0531824.2991420.391863.605566.951317.255279.636375.460347.803304.156266.465254.864232.34380.147204.131129.055172.819172.64161.165152.597144.301135.64146.295115.3969.159110.399111.377101.85195.65869.83554.22765.17163.48053.00537.80419.796OpenBenchmarking.org

Scikit-Learn

Benchmark: Isotonic / Perturbed Logarithm

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Isotonic / Perturbed Logarithmnoblescikit-learn-python-disabled-fp400800120016002000SE +/- 2.41, N = 3SE +/- 12.01, N = 31787.711824.301. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Isotonic / Logistic

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Isotonic / Logisticnoblescikit-learn-python-disabled-fp30060090012001500SE +/- 3.15, N = 3SE +/- 15.77, N = 31435.271420.391. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: SAGA

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: SAGAnoblescikit-learn-python-disabled-fp2004006008001000SE +/- 10.17, N = 4SE +/- 11.43, N = 3873.26863.611. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Sparse Random Projections / 100 Iterations

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Sparse Random Projections / 100 Iterationsnoblescikit-learn-python-disabled-fp120240360480600SE +/- 2.85, N = 3SE +/- 7.45, N = 3557.99566.951. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: SGDOneClassSVM

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: SGDOneClassSVMnoblescikit-learn-python-disabled-fp70140210280350SE +/- 9.62, N = 9SE +/- 3.04, N = 3328.94317.261. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: GLM

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: GLMnoblescikit-learn-python-disabled-fp60120180240300SE +/- 2.42, N = 8SE +/- 3.95, N = 3282.68279.641. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Covertype Dataset Benchmark

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Covertype Dataset Benchmarknoblescikit-learn-python-disabled-fp80160240320400SE +/- 3.40, N = 3SE +/- 5.29, N = 3375.95375.461. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Lasso

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Lassonoblescikit-learn-python-disabled-fp80160240320400SE +/- 2.06, N = 3SE +/- 1.29, N = 3351.02347.801. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Isolation Forest

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Isolation Forestnoblescikit-learn-python-disabled-fp70140210280350SE +/- 2.33, N = 3SE +/- 3.58, N = 3300.66304.161. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Kernel PCA Solvers / Time vs. N Samples

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Kernel PCA Solvers / Time vs. N Samplesnoblescikit-learn-python-disabled-fp60120180240300SE +/- 1.59, N = 3SE +/- 0.65, N = 3266.45266.471. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: TSNE MNIST Dataset

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: TSNE MNIST Datasetnoblescikit-learn-python-disabled-fp60120180240300SE +/- 1.20, N = 3SE +/- 0.80, N = 3259.76254.861. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Plot Lasso Path

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Plot Lasso Pathnoblescikit-learn-python-disabled-fp50100150200250SE +/- 0.17, N = 3SE +/- 0.91, N = 3232.40232.341. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: SGD Regression

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: SGD Regressionnoblescikit-learn-python-disabled-fp20406080100SE +/- 1.86, N = 15SE +/- 1.15, N = 383.0580.151. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Plot Hierarchical

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Plot Hierarchicalnoblescikit-learn-python-disabled-fp50100150200250SE +/- 1.82, N = 3SE +/- 1.58, N = 3207.12204.131. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Sparsify

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Sparsifynoblescikit-learn-python-disabled-fp306090120150SE +/- 1.56, N = 3SE +/- 1.16, N = 7130.30129.061. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Sample Without Replacement

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Sample Without Replacementnoblescikit-learn-python-disabled-fp4080120160200SE +/- 1.97, N = 3SE +/- 2.35, N = 3180.11172.821. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Plot Fast KMeans

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Plot Fast KMeansnoblescikit-learn-python-disabled-fp4080120160200SE +/- 0.83, N = 3SE +/- 0.39, N = 3172.98172.641. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Hist Gradient Boosting Higgs Boson

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Hist Gradient Boosting Higgs Bosonnoblescikit-learn-python-disabled-fp1428425670SE +/- 0.02, N = 3SE +/- 0.34, N = 361.3661.171. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Plot Polynomial Kernel Approximation

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Plot Polynomial Kernel Approximationnoblescikit-learn-python-disabled-fp306090120150SE +/- 0.93, N = 3SE +/- 0.38, N = 3155.49152.601. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Plot Neighbors

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Plot Neighborsnoblescikit-learn-python-disabled-fp306090120150SE +/- 1.68, N = 3SE +/- 1.18, N = 3144.44144.301. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Feature Expansions

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Feature Expansionsnoblescikit-learn-python-disabled-fp306090120150SE +/- 0.89, N = 3SE +/- 1.29, N = 3135.12135.641. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Tree

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Treenoblescikit-learn-python-disabled-fp1122334455SE +/- 0.53, N = 15SE +/- 0.65, N = 348.3346.301. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Hist Gradient Boosting

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Hist Gradient Boostingnoblescikit-learn-python-disabled-fp306090120150SE +/- 0.39, N = 3SE +/- 0.19, N = 3117.09115.391. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Kernel PCA Solvers / Time vs. N Components

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Kernel PCA Solvers / Time vs. N Componentsnoblescikit-learn-python-disabled-fp1632486480SE +/- 0.61, N = 8SE +/- 0.34, N = 370.2369.161. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Hist Gradient Boosting Adult

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Hist Gradient Boosting Adultnoblescikit-learn-python-disabled-fp306090120150SE +/- 0.14, N = 3SE +/- 0.40, N = 3111.83110.401. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Hist Gradient Boosting Threading

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Hist Gradient Boosting Threadingnoblescikit-learn-python-disabled-fp306090120150SE +/- 0.28, N = 3SE +/- 0.03, N = 3111.84111.381. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Plot Incremental PCA

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Plot Incremental PCAnoblescikit-learn-python-disabled-fp20406080100SE +/- 0.45, N = 3SE +/- 0.24, N = 3102.79101.851. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Plot Singular Value Decomposition

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Plot Singular Value Decompositionnoblescikit-learn-python-disabled-fp20406080100SE +/- 0.67, N = 3SE +/- 0.55, N = 396.6195.661. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Plot OMP vs. LARS

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Plot OMP vs. LARSnoblescikit-learn-python-disabled-fp1632486480SE +/- 0.22, N = 3SE +/- 0.20, N = 370.0969.841. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Plot Ward

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Plot Wardnoblescikit-learn-python-disabled-fp1224364860SE +/- 0.59, N = 5SE +/- 0.66, N = 353.9954.231. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: MNIST Dataset

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: MNIST Datasetnoblescikit-learn-python-disabled-fp1530456075SE +/- 0.42, N = 3SE +/- 0.76, N = 365.7165.171. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Text Vectorizers

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Text Vectorizersnoblescikit-learn-python-disabled-fp1530456075SE +/- 0.04, N = 3SE +/- 0.34, N = 365.7463.481. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: LocalOutlierFactor

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: LocalOutlierFactornoblescikit-learn-python-disabled-fp1224364860SE +/- 0.10, N = 3SE +/- 0.19, N = 353.3953.011. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: 20 Newsgroups / Logistic Regression

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: 20 Newsgroups / Logistic Regressionnoblescikit-learn-python-disabled-fp918273645SE +/- 0.16, N = 3SE +/- 0.16, N = 337.5937.801. (F9X) gfortran options: -O0

Scikit-Learn

Benchmark: Hist Gradient Boosting Categorical Only

OpenBenchmarking.orgSeconds, Fewer Is BetterScikit-Learn 1.2.2Benchmark: Hist Gradient Boosting Categorical Onlynoblescikit-learn-python-disabled-fp510152025SE +/- 0.12, N = 3SE +/- 0.09, N = 320.0519.801. (F9X) gfortran options: -O0


Phoronix Test Suite v10.8.5