SCIKIT-leaRn tests AMD Ryzen 9 3900X 12-Core testing with a MSI X570-A PRO (MS-7C37) v3.0 (H.70 BIOS) and NVIDIA GeForce RTX 3060 on Ubuntu 24.04 via the Phoronix Test Suite. Noble python 3.12 performance vs. python compiled without frame pointers.
HTML result view exported from: https://openbenchmarking.org/result/2405056-VPA1-MERGE7223 .
SCIKIT-leaRn tests Processor Motherboard Chipset Memory Disk Graphics Audio Monitor Network OS Kernel Compiler File-System Screen Resolution noble scikit-learn-python-disabled-fp AMD Ryzen 9 3900X 12-Core @ 3.80GHz (12 Cores / 24 Threads) MSI X570-A PRO (MS-7C37) v3.0 (H.70 BIOS) AMD Starship/Matisse 2 x 16GB DDR4-3200MT/s F4-3200C16-16GVK 2000GB Seagate ST2000DM006-2DM1 + 2000GB Western Digital WD20EZAZ-00G + 500GB Samsung SSD 860 + 8002GB Seagate ST8000DM004-2CX1 + 1000GB CT1000BX500SSD1 + 512GB TS512GESD310C NVIDIA GeForce RTX 3060 NVIDIA GA104 HD Audio DELL P2314H + U32J59x Realtek RTL8111/8168/8211/8411 Ubuntu 24.04 6.8.0-31-generic (x86_64) GCC 13.2.0 ext4 1920x1080 OpenBenchmarking.org Kernel Details - Transparent Huge Pages: madvise Compiler Details - noble: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-backtrace --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - scikit-learn-python-disabled-fp: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-backtrace --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-S2PGXz/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-S2PGXz/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details - Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x8701013 Python Details - Python 3.12.3 Security Details - gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + reg_file_data_sampling: Not affected + retbleed: Mitigation of untrained return thunk; SMT enabled with STIBP protection + spec_rstack_overflow: Mitigation of Safe RET + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines; IBPB: conditional; STIBP: always-on; RSB filling; PBRSB-eIBRS: Not affected; BHI: Not affected + srbds: Not affected + tsx_async_abort: Not affected
SCIKIT-leaRn tests scikit-learn: GLM scikit-learn: SAGA scikit-learn: Tree scikit-learn: Lasso scikit-learn: Sparsify scikit-learn: Plot Ward scikit-learn: MNIST Dataset scikit-learn: Plot Neighbors scikit-learn: SGD Regression scikit-learn: SGDOneClassSVM scikit-learn: Plot Lasso Path scikit-learn: Isolation Forest scikit-learn: Plot Fast KMeans scikit-learn: Text Vectorizers scikit-learn: Plot Hierarchical scikit-learn: Plot OMP vs. LARS scikit-learn: Feature Expansions scikit-learn: LocalOutlierFactor scikit-learn: TSNE MNIST Dataset scikit-learn: Isotonic / Logistic scikit-learn: Plot Incremental PCA scikit-learn: Hist Gradient Boosting scikit-learn: Sample Without Replacement scikit-learn: Covertype Dataset Benchmark scikit-learn: Hist Gradient Boosting Adult scikit-learn: Isotonic / Perturbed Logarithm scikit-learn: Hist Gradient Boosting Threading scikit-learn: Plot Singular Value Decomposition scikit-learn: Hist Gradient Boosting Higgs Boson scikit-learn: 20 Newsgroups / Logistic Regression scikit-learn: Plot Polynomial Kernel Approximation scikit-learn: Hist Gradient Boosting Categorical Only scikit-learn: Kernel PCA Solvers / Time vs. N Samples scikit-learn: Kernel PCA Solvers / Time vs. N Components scikit-learn: Sparse Rand Projections / 100 Iterations noble scikit-learn-python-disabled-fp 282.676 873.257 48.325 351.023 130.297 53.990 65.706 144.444 83.045 328.938 232.397 300.663 172.977 65.740 207.115 70.087 135.121 53.388 259.758 1435.273 102.786 117.089 180.105 375.954 111.830 1787.711 111.843 96.614 61.363 37.588 155.494 20.053 266.450 70.231 557.985 279.636 863.605 46.295 347.803 129.055 54.227 65.171 144.301 80.147 317.255 232.343 304.156 172.641 63.480 204.131 69.835 135.641 53.005 254.864 1420.391 101.851 115.39 172.819 375.460 110.399 1824.299 111.377 95.658 61.165 37.804 152.597 19.796 266.465 69.159 566.951 OpenBenchmarking.org
Scikit-Learn Benchmark: GLM OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: GLM noble scikit-learn-python-disabled-fp 60 120 180 240 300 SE +/- 2.42, N = 8 SE +/- 3.95, N = 3 282.68 279.64 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: SAGA OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: SAGA noble scikit-learn-python-disabled-fp 200 400 600 800 1000 SE +/- 10.17, N = 4 SE +/- 11.43, N = 3 873.26 863.61 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Tree OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Tree noble scikit-learn-python-disabled-fp 11 22 33 44 55 SE +/- 0.53, N = 15 SE +/- 0.65, N = 3 48.33 46.30 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Lasso OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Lasso noble scikit-learn-python-disabled-fp 80 160 240 320 400 SE +/- 2.06, N = 3 SE +/- 1.29, N = 3 351.02 347.80 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Sparsify OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Sparsify noble scikit-learn-python-disabled-fp 30 60 90 120 150 SE +/- 1.56, N = 3 SE +/- 1.16, N = 7 130.30 129.06 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Plot Ward OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Plot Ward noble scikit-learn-python-disabled-fp 12 24 36 48 60 SE +/- 0.59, N = 5 SE +/- 0.66, N = 3 53.99 54.23 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: MNIST Dataset OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: MNIST Dataset noble scikit-learn-python-disabled-fp 15 30 45 60 75 SE +/- 0.42, N = 3 SE +/- 0.76, N = 3 65.71 65.17 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Plot Neighbors OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Plot Neighbors noble scikit-learn-python-disabled-fp 30 60 90 120 150 SE +/- 1.68, N = 3 SE +/- 1.18, N = 3 144.44 144.30 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: SGD Regression OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: SGD Regression noble scikit-learn-python-disabled-fp 20 40 60 80 100 SE +/- 1.86, N = 15 SE +/- 1.15, N = 3 83.05 80.15 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: SGDOneClassSVM OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: SGDOneClassSVM noble scikit-learn-python-disabled-fp 70 140 210 280 350 SE +/- 9.62, N = 9 SE +/- 3.04, N = 3 328.94 317.26 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Plot Lasso Path OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Plot Lasso Path noble scikit-learn-python-disabled-fp 50 100 150 200 250 SE +/- 0.17, N = 3 SE +/- 0.91, N = 3 232.40 232.34 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Isolation Forest OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Isolation Forest noble scikit-learn-python-disabled-fp 70 140 210 280 350 SE +/- 2.33, N = 3 SE +/- 3.58, N = 3 300.66 304.16 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Plot Fast KMeans OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Plot Fast KMeans noble scikit-learn-python-disabled-fp 40 80 120 160 200 SE +/- 0.83, N = 3 SE +/- 0.39, N = 3 172.98 172.64 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Text Vectorizers OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Text Vectorizers noble scikit-learn-python-disabled-fp 15 30 45 60 75 SE +/- 0.04, N = 3 SE +/- 0.34, N = 3 65.74 63.48 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Plot Hierarchical OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Plot Hierarchical noble scikit-learn-python-disabled-fp 50 100 150 200 250 SE +/- 1.82, N = 3 SE +/- 1.58, N = 3 207.12 204.13 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Plot OMP vs. LARS OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Plot OMP vs. LARS noble scikit-learn-python-disabled-fp 16 32 48 64 80 SE +/- 0.22, N = 3 SE +/- 0.20, N = 3 70.09 69.84 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Feature Expansions OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Feature Expansions noble scikit-learn-python-disabled-fp 30 60 90 120 150 SE +/- 0.89, N = 3 SE +/- 1.29, N = 3 135.12 135.64 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: LocalOutlierFactor OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: LocalOutlierFactor noble scikit-learn-python-disabled-fp 12 24 36 48 60 SE +/- 0.10, N = 3 SE +/- 0.19, N = 3 53.39 53.01 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: TSNE MNIST Dataset OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: TSNE MNIST Dataset noble scikit-learn-python-disabled-fp 60 120 180 240 300 SE +/- 1.20, N = 3 SE +/- 0.80, N = 3 259.76 254.86 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Isotonic / Logistic OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Isotonic / Logistic noble scikit-learn-python-disabled-fp 300 600 900 1200 1500 SE +/- 3.15, N = 3 SE +/- 15.77, N = 3 1435.27 1420.39 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Plot Incremental PCA OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Plot Incremental PCA noble scikit-learn-python-disabled-fp 20 40 60 80 100 SE +/- 0.45, N = 3 SE +/- 0.24, N = 3 102.79 101.85 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Hist Gradient Boosting OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Hist Gradient Boosting noble scikit-learn-python-disabled-fp 30 60 90 120 150 SE +/- 0.39, N = 3 SE +/- 0.19, N = 3 117.09 115.39 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Sample Without Replacement OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Sample Without Replacement noble scikit-learn-python-disabled-fp 40 80 120 160 200 SE +/- 1.97, N = 3 SE +/- 2.35, N = 3 180.11 172.82 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Covertype Dataset Benchmark OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Covertype Dataset Benchmark noble scikit-learn-python-disabled-fp 80 160 240 320 400 SE +/- 3.40, N = 3 SE +/- 5.29, N = 3 375.95 375.46 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Hist Gradient Boosting Adult OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Hist Gradient Boosting Adult noble scikit-learn-python-disabled-fp 30 60 90 120 150 SE +/- 0.14, N = 3 SE +/- 0.40, N = 3 111.83 110.40 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Isotonic / Perturbed Logarithm OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Isotonic / Perturbed Logarithm noble scikit-learn-python-disabled-fp 400 800 1200 1600 2000 SE +/- 2.41, N = 3 SE +/- 12.01, N = 3 1787.71 1824.30 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Hist Gradient Boosting Threading OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Hist Gradient Boosting Threading noble scikit-learn-python-disabled-fp 30 60 90 120 150 SE +/- 0.28, N = 3 SE +/- 0.03, N = 3 111.84 111.38 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Plot Singular Value Decomposition OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Plot Singular Value Decomposition noble scikit-learn-python-disabled-fp 20 40 60 80 100 SE +/- 0.67, N = 3 SE +/- 0.55, N = 3 96.61 95.66 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Hist Gradient Boosting Higgs Boson OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Hist Gradient Boosting Higgs Boson noble scikit-learn-python-disabled-fp 14 28 42 56 70 SE +/- 0.02, N = 3 SE +/- 0.34, N = 3 61.36 61.17 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: 20 Newsgroups / Logistic Regression OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: 20 Newsgroups / Logistic Regression noble scikit-learn-python-disabled-fp 9 18 27 36 45 SE +/- 0.16, N = 3 SE +/- 0.16, N = 3 37.59 37.80 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Plot Polynomial Kernel Approximation OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Plot Polynomial Kernel Approximation noble scikit-learn-python-disabled-fp 30 60 90 120 150 SE +/- 0.93, N = 3 SE +/- 0.38, N = 3 155.49 152.60 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Hist Gradient Boosting Categorical Only OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Hist Gradient Boosting Categorical Only noble scikit-learn-python-disabled-fp 5 10 15 20 25 SE +/- 0.12, N = 3 SE +/- 0.09, N = 3 20.05 19.80 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Kernel PCA Solvers / Time vs. N Samples OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Kernel PCA Solvers / Time vs. N Samples noble scikit-learn-python-disabled-fp 60 120 180 240 300 SE +/- 1.59, N = 3 SE +/- 0.65, N = 3 266.45 266.47 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Kernel PCA Solvers / Time vs. N Components OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Kernel PCA Solvers / Time vs. N Components noble scikit-learn-python-disabled-fp 16 32 48 64 80 SE +/- 0.61, N = 8 SE +/- 0.34, N = 3 70.23 69.16 1. (F9X) gfortran options: -O0
Scikit-Learn Benchmark: Sparse Random Projections / 100 Iterations OpenBenchmarking.org Seconds, Fewer Is Better Scikit-Learn 1.2.2 Benchmark: Sparse Random Projections / 100 Iterations noble scikit-learn-python-disabled-fp 120 240 360 480 600 SE +/- 2.85, N = 3 SE +/- 7.45, N = 3 557.99 566.95 1. (F9X) gfortran options: -O0
Phoronix Test Suite v10.8.4