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Bioinformatics 3 Tests
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April 29 2012
 
2 x AMD EPYC 7H12 64-Core
January 30 2023
  14 Minutes
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phoronixProcessorMotherboardMemoryDiskGraphicsAudioMonitorChipsetNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen Resolutiontest2 x AMD EPYC 7H12 64-CoreAMD Phenom II X4 945 @ 3.00GHz (4 Cores)Gigabyte GA-MA78GM-S2H6144MB160GB Seagate ST3160215ASGallium 0.4 on AMD RS780 512MBRealtek ALC889APLE2607WSCalculate Linux Desktop 11.15 GNOME3.3.3-calculate (x86_64)GNOME Shell 3.2.2.1X Server 1.11.22.1 Mesa 7.11.2 Gallium 0.4GCC 4.5.3 + LLVM 2.9ext41920x12002 x AMD EPYC 7H12 64-Core @ 2.60GHz (128 Cores / 256 Threads)Dell PowerEdge R7525 [0590KW] (2.9.3 BIOS)AMD Starship/Matisse32 x 64 GB DDR4-2933MT/s HMAA8GR7AJR4N-XN480GB PERC H345 Front + 21598GB PERC H345 FrontMatrox G200eW32 x Intel X710 for 10GbE SFP+ + 2 x Broadcom NetXtreme BCM5720 2-port PCIeCentOS 7.9.20095.4.230-1.el7.elrepo.x86_64 (x86_64)X ServerGCC 9.2.0 + CUDA 12.01024x768OpenBenchmarking.orgKernel Details- 2 x AMD EPYC 7H12 64-Core: Transparent Huge Pages: alwaysCompiler Details- 2 x AMD EPYC 7H12 64-Core: --disable-multilib --enable-languages=c,c++Processor Details- 2 x AMD EPYC 7H12 64-Core: Scaling Governor: acpi-cpufreq conservative (Boost: Enabled) - CPU Microcode: 0x8301055Security Details- 2 x AMD EPYC 7H12 64-Core: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Vulnerable + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: conditional RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

test vs. 2 x AMD EPYC 7H12 64-Core ComparisonPhoronix Test SuiteBaseline+2958.2%+2958.2%+5916.4%+5916.4%+8874.6%+8874.6%725.2%5820.1%465%312.9%272.9%177.9%1720.8%11832.6%95.8%83.9%67.5%LU.AEP.BUA.ATime To CompileIS.CP.D.SBlowfishTotal TimeP.P.SM.S.AElapsed TimeNAS Parallel BenchmarksNAS Parallel BenchmarksNAS Parallel BenchmarksTimed PHP CompilationNAS Parallel BenchmarksTimed HMMer SearchJohn The RipperC-RayHimeno BenchmarkTimed MAFFT AlignmentCraftytest2 x AMD EPYC 7H12 64-Core

phoronixcompress-7zip: Compress Speed Testcompress-pbzip2: 256MB File Compressionx264: H.264 Video Encodingopenssl: RSA 4096-bit Performancegcrypt: CAMELLIA256-ECB Cipherjohn-the-ripper: Blowfishgraphics-magick: Local Adaptive Thresholdinggraphics-magick: Resizinghimeno: Poisson Pressure Solverc-ray: Total Timesmallpt: Global Illumination Renderer; 100 Samplescrafty: Elapsed Timehmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentminion: Quasigroupminion: Solitairenpb: EP.Bnpb: IS.Cnpb: LU.Anpb: UA.Abuild-php: Time To Compiletest2 x AMD EPYC 7H12 64-Core862317.1463.2656.65320033994399508.7993.79204113.5925.1113.07233.02389.5887.6468.994446.4418.3854.5261888996.3528290.78667.839.0367.1085188.40257.2536689.80103.8413.205OpenBenchmarking.org

7-Zip Compression

OpenBenchmarking.orgMIPS, More Is Better7-Zip Compression 9.20.1Compress Speed Testtest2K4K6K8K10KSE +/- 14.98, N = 386231. (CXX) g++ options: -pipe -lpthread
OpenBenchmarking.orgMIPS, More Is Better7-Zip Compression 9.20.1Compress Speed Testtest15003000450060007500Min: 8594 / Avg: 8623 / Max: 86441. (CXX) g++ options: -pipe -lpthread

Compress Speed Test

2 x AMD EPYC 7H12 64-Core: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: ./p7zip_9.20.1/bin/7za: /lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by ./p7zip_9.20.1/bin/7za)

Parallel BZIP2 Compression

OpenBenchmarking.orgSeconds, Fewer Is BetterParallel BZIP2 Compression 1.0.5256MB File Compressiontest48121620SE +/- 0.02, N = 317.141. (CXX) g++ options: -O2 -pthread -lpthread -lbz2

x264

OpenBenchmarking.orgFrames Per Second, More Is Betterx264 2011-12-06H.264 Video Encodingtest1428425670SE +/- 0.11, N = 363.26
OpenBenchmarking.orgFrames Per Second, More Is Betterx264 2011-12-06H.264 Video Encodingtest1224364860Min: 63.08 / Avg: 63.26 / Max: 63.45

H.264 Video Encoding

2 x AMD EPYC 7H12 64-Core: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status.

OpenSSL

OpenBenchmarking.orgSigns Per Second, More Is BetterOpenSSL 1.0.0eRSA 4096-bit Performancetest1326395265SE +/- 0.05, N = 456.651. (CC) gcc options: -m64 -O3 -lssl -lcrypto -ldl
OpenBenchmarking.orgSigns Per Second, More Is BetterOpenSSL 1.0.0eRSA 4096-bit Performancetest1122334455Min: 56.5 / Avg: 56.65 / Max: 56.71. (CC) gcc options: -m64 -O3 -lssl -lcrypto -ldl

RSA 4096-bit Performance

2 x AMD EPYC 7H12 64-Core: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: openssl: line 2: ./openssl_/bin/openssl: No such file or directory

Gcrypt Library

OpenBenchmarking.orgMicroseconds, Fewer Is BetterGcrypt Library 1.4.4CAMELLIA256-ECB Ciphertest7001400210028003500SE +/- 5.77, N = 332001. (CC) gcc options: -O2 -fvisibility=hidden
OpenBenchmarking.orgMicroseconds, Fewer Is BetterGcrypt Library 1.4.4CAMELLIA256-ECB Ciphertest6001200180024003000Min: 3190 / Avg: 3200 / Max: 32101. (CC) gcc options: -O2 -fvisibility=hidden

CAMELLIA256-ECB Cipher

2 x AMD EPYC 7H12 64-Core: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: gcrypt: line 2: ./libgcrypt-1.4.4/tests/benchmark: No such file or directory

John The Ripper

OpenBenchmarking.orgReal C/S, More Is BetterJohn The Ripper 1.7.9Test: Blowfishtest2 x AMD EPYC 7H12 64-Core13K26K39K52K65KSE +/- 2.08, N = 3SE +/- 468.34, N = 33399618881. (CC) gcc options: -fopenmp -lcrypt
OpenBenchmarking.orgReal C/S, More Is BetterJohn The Ripper 1.7.9Test: Blowfishtest2 x AMD EPYC 7H12 64-Core11K22K33K44K55KMin: 3396 / Avg: 3399 / Max: 3403Min: 61363 / Avg: 61887.67 / Max: 628221. (CC) gcc options: -fopenmp -lcrypt

GraphicsMagick

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.12Operation: Local Adaptive Thresholdingtest1020304050SE +/- 0.00, N = 3431. (CC) gcc options: -std=gnu99 -fopenmp -O2 -pthread -llcms -ltiff -lfreetype -ljasper -ljpeg -lwmflite -lXext -lSM -lICE -lX11 -lbz2 -lxml2 -lz -lm -lrt -lpthread

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.12Operation: Resizingtest20406080100SE +/- 0.33, N = 3991. (CC) gcc options: -std=gnu99 -fopenmp -O2 -pthread -llcms -ltiff -lfreetype -ljasper -ljpeg -lwmflite -lXext -lSM -lICE -lX11 -lbz2 -lxml2 -lz -lm -lrt -lpthread

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solvertest2 x AMD EPYC 7H12 64-Core2004006008001000SE +/- 1.26, N = 3SE +/- 0.60, N = 3508.79996.351. (CC) gcc options: -O3
OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solvertest2 x AMD EPYC 7H12 64-Core2004006008001000Min: 506.41 / Avg: 508.79 / Max: 510.71Min: 995.36 / Avg: 996.35 / Max: 997.431. (CC) gcc options: -O3

C-Ray

This is a test of C-Ray, a simple raytracer designed to test the floating-point CPU performance. This test is multi-threaded (16 threads per core), will shoot 8 rays per pixel for anti-aliasing, and will generate a 1600 x 1200 image. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total Timetest2 x AMD EPYC 7H12 64-Core20406080100SE +/- 0.013, N = 3SE +/- 0.014, N = 1593.7900.7861. (CC) gcc options: -lm -lpthread -O3
OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total Timetest2 x AMD EPYC 7H12 64-Core20406080100Min: 93.77 / Avg: 93.79 / Max: 93.81Min: 0.7 / Avg: 0.79 / Max: 0.871. (CC) gcc options: -lm -lpthread -O3

Smallpt

Smallpt is a C++ global illumination renderer written in less than 100 lines of code. Global illumination is done via unbiased Monte Carlo path tracing and there is multi-threading support via the OpenMP library. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSmallpt 1.0Global Illumination Renderer; 100 Samplestest4080120160200SE +/- 0.00, N = 32041. (CXX) g++ options: -fopenmp
OpenBenchmarking.orgSeconds, Fewer Is BetterSmallpt 1.0Global Illumination Renderer; 100 Samplestest4080120160200Min: 204 / Avg: 204 / Max: 2041. (CXX) g++ options: -fopenmp

Global Illumination Renderer; 100 Samples

2 x AMD EPYC 7H12 64-Core: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: ./smallpt-renderer: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by ./smallpt-renderer)

Crafty

OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed Timetest2 x AMD EPYC 7H12 64-Core306090120150SE +/- 0.23, N = 3SE +/- 0.03, N = 3113.5967.831. (CC) gcc options: -lstdc++ -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed Timetest2 x AMD EPYC 7H12 64-Core20406080100Min: 113.3 / Avg: 113.59 / Max: 114.05Min: 67.79 / Avg: 67.83 / Max: 67.881. (CC) gcc options: -lstdc++ -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchtest2 x AMD EPYC 7H12 64-Core612182430SE +/- 0.148, N = 3SE +/- 0.042, N = 325.1109.0361. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchtest2 x AMD EPYC 7H12 64-Core612182430Min: 24.81 / Avg: 25.11 / Max: 25.27Min: 8.98 / Avg: 9.04 / Max: 9.121. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmenttest2 x AMD EPYC 7H12 64-Core3691215SE +/- 0.002, N = 3SE +/- 0.025, N = 313.0707.1081. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmenttest2 x AMD EPYC 7H12 64-Core48121620Min: 13.07 / Avg: 13.07 / Max: 13.07Min: 7.06 / Avg: 7.11 / Max: 7.151. (CC) gcc options: -O3 -lm -lpthread

Minion

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12Benchmark: Quasigrouptest50100150200250SE +/- 1.68, N = 3233.021. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams-mt -lz -lbz2
OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12Benchmark: Quasigrouptest4080120160200Min: 230.8 / Avg: 233.02 / Max: 236.321. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams-mt -lz -lbz2

Benchmark: Quasigroup

2 x AMD EPYC 7H12 64-Core: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: minion: line 3: ./build/minion-quick: No such file or directory

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12Benchmark: Solitairetest80160240320400SE +/- 56.11, N = 6389.581. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams-mt -lz -lbz2
OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12Benchmark: Solitairetest70140210280350Min: 262.16 / Avg: 389.58 / Max: 516.911. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams-mt -lz -lbz2

Benchmark: Solitaire

2 x AMD EPYC 7H12 64-Core: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: minion: line 3: ./build/minion-quick: No such file or directory

NAS Parallel Benchmarks

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: EP.Btest2 x AMD EPYC 7H12 64-Core11002200330044005500SE +/- 0.38, N = 3SE +/- 55.37, N = 1587.645188.401. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: EP.Btest2 x AMD EPYC 7H12 64-Core9001800270036004500Min: 87.01 / Avg: 87.64 / Max: 88.33Min: 4842.51 / Avg: 5188.4 / Max: 5722.71. (F9X) gfortran options: -fopenmp

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: IS.Ctest2 x AMD EPYC 7H12 64-Core60120180240300SE +/- 0.98, N = 6SE +/- 0.41, N = 368.99257.251. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: IS.Ctest2 x AMD EPYC 7H12 64-Core50100150200250Min: 67.4 / Avg: 68.99 / Max: 72.1Min: 256.72 / Avg: 257.25 / Max: 258.061. (F9X) gfortran options: -fopenmp

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: LU.Atest2 x AMD EPYC 7H12 64-Core8K16K24K32K40KSE +/- 16.48, N = 3SE +/- 353.69, N = 64446.4436689.801. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: LU.Atest2 x AMD EPYC 7H12 64-Core6K12K18K24K30KMin: 4428.86 / Avg: 4446.44 / Max: 4479.38Min: 35791.21 / Avg: 36689.8 / Max: 37998.411. (F9X) gfortran options: -fopenmp

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: UA.Atest2 x AMD EPYC 7H12 64-Core20406080100SE +/- 0.12, N = 3SE +/- 2.08, N = 1218.38103.841. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: UA.Atest2 x AMD EPYC 7H12 64-Core20406080100Min: 18.25 / Avg: 18.38 / Max: 18.61Min: 96.1 / Avg: 103.84 / Max: 124.021. (F9X) gfortran options: -fopenmp

Timed PHP Compilation

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed PHP Compilation 5.2.9Time To Compiletest2 x AMD EPYC 7H12 64-Core1224364860SE +/- 0.45, N = 3SE +/- 0.01, N = 354.5213.211. (CC) gcc options: -O2 -pedantic -ldl -lz -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed PHP Compilation 5.2.9Time To Compiletest2 x AMD EPYC 7H12 64-Core1122334455Min: 53.7 / Avg: 54.52 / Max: 55.24Min: 13.19 / Avg: 13.2 / Max: 13.231. (CC) gcc options: -O2 -pedantic -ldl -lz -lm