bioinfo-IFB-oscar-ubuntu-8

KVM testing on Ubuntu 22.04 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2211082-DSAL-BIOINFO55&grr.

bioinfo-IFB-oscar-ubuntu-8ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelVulkanCompilerFile-SystemSystem LayerIFB-oscar-ubuntu-88 x Intel Xeon (Skylake IBRS) (8 Cores)RDO OpenStack Compute (1.14.0-1.el8 BIOS)Intel 440FX 82441FX PMC32GB124GBCirrus Logic GD 5446Red Hat Virtio deviceUbuntu 22.045.15.0-46-generic (x86_64)1.2.204GCC 11.3.0ext4KVMOpenBenchmarking.org- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - CPU Microcode: 0x1- Python 2.7.18 + Python 3.10.6- itlb_multihit: Not affected + l1tf: Mitigation of PTE Inversion; VMX: flush not necessary SMT disabled + mds: Mitigation of Clear buffers; SMT Host state unknown + meltdown: Mitigation of PTI + mmio_stale_data: Vulnerable: Clear buffers attempted no microcode; SMT Host state unknown + retbleed: Mitigation of IBRS + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT Host state unknown

bioinfo-IFB-oscar-ubuntu-8mrbayes: Primate Phylogeny Analysishmmer: Pfam Database Searchqmcpack: simple-H2Ohimeno: Poisson Pressure Solvermafft: Multiple Sequence Alignment - LSU RNAIFB-oscar-ubuntu-8290.342188.90066.8152489.29093116.653OpenBenchmarking.org

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny AnalysisIFB-oscar-ubuntu-860120180240300SE +/- 0.04, N = 3290.341. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O3 -std=c99 -pedantic -lm

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database SearchIFB-oscar-ubuntu-84080120160200SE +/- 0.34, N = 3188.901. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

QMCPACK

Input: simple-H2O

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.13Input: simple-H2OIFB-oscar-ubuntu-81530456075SE +/- 0.28, N = 366.821. (CXX) g++ options: -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm -ldl

Himeno Benchmark

Poisson Pressure Solver

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolverIFB-oscar-ubuntu-85001000150020002500SE +/- 33.17, N = 32489.291. (CC) gcc options: -O3 -mavx2

Timed MAFFT Alignment

Multiple Sequence Alignment - LSU RNA

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAIFB-oscar-ubuntu-848121620SE +/- 0.13, N = 916.651. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Phoronix Test Suite v10.8.4