bioinfo-IFB-girofle-ubuntu-8

KVM testing on Ubuntu 22.04 via the Phoronix Test Suite.bioinfo-benchmark: VMware testing on Ubuntu 22.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2211081-DSAL-BIOINFO02
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
IFB-girofle-ubuntu-8
November 07 2022
  30 Minutes
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bioinfo-IFB-girofle-ubuntu-8OpenBenchmarking.orgPhoronix Test Suite 10.8.48 x Intel Xeon E3-12xx v2 (Ivy Bridge) (8 Cores)OpenStack Foundation Nova v24.1.1 (1.13.0-1ubuntu1.1 BIOS)Intel 440FX 82441FX PMC16GB49GBCirrus Logic GD 5446Red Hat Virtio deviceUbuntu 22.045.15.0-30-generic (x86_64)1.2.204GCC 11.3.0ext4KVMProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelVulkanCompilerFile-SystemSystem LayerBioinfo-IFB-girofle-ubuntu-8 BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - CPU Microcode: 0x1- Python 2.7.18 + Python 3.10.6- itlb_multihit: Not affected + l1tf: Mitigation of PTE Inversion; VMX: flush not necessary SMT disabled + mds: Vulnerable: Clear buffers attempted no microcode; SMT Host state unknown + meltdown: Mitigation of PTI + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines STIBP: disabled RSB filling + srbds: Unknown: Dependent on hypervisor status + tsx_async_abort: Not affected

bioinfo-IFB-girofle-ubuntu-8mrbayes: Primate Phylogeny Analysisqmcpack: simple-H2Ohmmer: Pfam Database Searchmafft: Multiple Sequence Alignment - LSU RNAhimeno: Poisson Pressure SolverIFB-girofle-ubuntu-8239.48857.249205.98117.3312423.657804OpenBenchmarking.org

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny AnalysisIFB-girofle-ubuntu-850100150200250SE +/- 0.47, N = 3239.491. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mrdrnd -O3 -std=c99 -pedantic -lm

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. QMCPACK is an open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. QMCPACK is supported by the U.S. Department of Energy. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.13Input: simple-H2OIFB-girofle-ubuntu-81326395265SE +/- 0.23, N = 357.251. (CXX) g++ options: -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm -ldl

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database SearchIFB-girofle-ubuntu-850100150200250SE +/- 0.37, N = 3205.981. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAIFB-girofle-ubuntu-848121620SE +/- 0.18, N = 617.331. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolverIFB-girofle-ubuntu-85001000150020002500SE +/- 23.30, N = 32423.661. (CC) gcc options: -O3