Parallel Bioindormatic

Parallels Virtualization testing on FreeBSD via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2208195-NE-2106214IB17
Jump To Table - Results

View

Do Not Show Noisy Results
Do Not Show Results With Incomplete Data
Do Not Show Results With Little Change/Spread
List Notable Results

Limit displaying results to tests within:

Bioinformatics 2 Tests
C/C++ Compiler Tests 2 Tests
CPU Massive 2 Tests
HPC - High Performance Computing 2 Tests
Scientific Computing 2 Tests

Statistics

Show Overall Harmonic Mean(s)
Show Overall Geometric Mean
Show Geometric Means Per-Suite/Category
Show Wins / Losses Counts (Pie Chart)
Normalize Results
Remove Outliers Before Calculating Averages

Graph Settings

Force Line Graphs Where Applicable
Convert To Scalar Where Applicable
Disable Color Branding
Prefer Vertical Bar Graphs

Additional Graphs

Show Perf Per Core/Thread Calculation Graphs Where Applicable

Table

Show Detailed System Result Table

Run Management

Highlight
Result
Hide
Result
Result
Identifier
View Logs
Performance Per
Dollar
Date
Run
  Test
  Duration
Musl Stable cmang 11.1.0
April 29 2021
  30 Minutes
Gentoo HDD GLIBC GCC 11.1
May 16 2021
  5 Minutes
Gentoo HDD GLIBC Clang 12.0
May 16 2021
  6 Minutes
Ubuntu 21.04 miti GCC 10.3
June 21 2021
  3 Minutes
FreeBSD 13.1 ports ivybridge
August 19
  3 Minutes
Invert Hiding All Results Option
  9 Minutes

Only show results where is faster than
Only show results matching title/arguments (delimit multiple options with a comma):


Parallel BioindormaticProcessorMotherboardMemoryDiskGraphicsChipsetAudioMonitorNetworkOSKernelCompilerFile-SystemScreen ResolutionSystem LayerDesktopDisplay ServerDisplay DriverOpenGLOpenCLVulkanMusl Stable cmang 11.1.0Gentoo HDD GLIBC GCC 11.1Gentoo HDD GLIBC Clang 12.0Ubuntu 21.04 miti GCC 10.3FreeBSD 13.1 ports ivybridgeIntel Core i7-3615QM (8 Cores)Parallels Software Virtual (16.1.2 49151 BIOS)4096MB69GB Gentoo-Musl-0 SSvirtio_gpudrmfbGentoo/Linux5.10.27-gentoo-x86_64-gcc (x86_64)GCC 10.2.0ext41008x759Parallels VirtualizationIntel Core i7-3615QM @ 3.30GHz (4 Cores / 8 Threads)Apple Mac-C3EC7CD22292981F (421.0.0.0.0 BIOS)Intel 3rd Gen Core DRAM8GB251GB APPLE SSD SM256E + 500GB GenericNVIDIA GeForce GT 650M 1GBCirrus Logic CS4206Color LCDBroadcom NetXtreme BCM57786 PCIe + Broadcom BCM4331 802.11a/b/g/n5.12.4-gentoo-x86_64-v2 (x86_64)MATE 1.24.1X Server 1.20.11NVIDIA 465.274.6.0GCC 11.1.0 + Clang 12.0.0 + LLVM 12.0.0btrfs2880x1800Clang 12.0.0 + GCC 11.1.0 + LLVM 12.0.0251GB APPLE SSD SM256EBroadcom NetXtreme BCM57786 PCIe + Broadcom NetXtreme BCM57762 PCIe + Broadcom BCM4331 802.11a/b/g/nUbuntu 21.045.11.0-18-generic (x86_64)NVIDIA 460.80OpenCL 1.2 CUDA 11.2.1621.2.155GCC 10.3.0 + Clang 12.0.0-1ubuntu1 + LLVM 12.0.0zfsIntel Core i7-3615QM (8 Cores)Parallels Software VirtualIntel 82P965/G965 MCH4096MB59GBParallels Accelerated Virtual VideoIntel Legacy PRO/1000 MT 82545EM (Copper)FreeBSD13.1-STABLE (x86_64)Clang 14.0.5ufs1024x768Parallels VirtualizationOpenBenchmarking.orgKernel Details- Musl Stable cmang 11.1.0: Transparent Huge Pages: always- Gentoo HDD GLIBC GCC 11.1: i915.fastboot=1 - Transparent Huge Pages: always- Gentoo HDD GLIBC Clang 12.0: i915.fastboot=1 - Transparent Huge Pages: always- Ubuntu 21.04 miti GCC 10.3: Transparent Huge Pages: madviseCompiler Details- Musl Stable cmang 11.1.0: --bindir=/usr/x86_64-gentoo-linux-musl/gcc-bin/10.2.0 --build=x86_64-gentoo-linux-musl --datadir=/usr/share/gcc-data/x86_64-gentoo-linux-musl/10.2.0 --disable-fixed-point --disable-libada --disable-libsanitizer --disable-libssp --disable-libstdcxx-pch --disable-libvtv --disable-multilib --disable-nls --disable-systemtap --disable-vtable-verify --disable-werror --enable-__cxa_atexit --enable-checking=release --enable-default-pie --enable-default-ssp --enable-esp --enable-languages=c,c++,fortran --enable-libgomp --enable-libstdcxx-time --enable-lto --enable-obsolete --enable-secureplt --enable-shared --enable-targets=all --enable-threads=posix --host=x86_64-gentoo-linux-musl --includedir=/usr/lib/gcc/x86_64-gentoo-linux-musl/10.2.0/include --mandir=/usr/share/gcc-data/x86_64-gentoo-linux-musl/10.2.0/man --with-multilib-list=m64 --with-python-dir=/share/gcc-data/x86_64-gentoo-linux-musl/10.2.0/python --with-zstd --without-isl - Gentoo HDD GLIBC Clang 12.0: Optimized build; Default target: x86_64-pc-linux-gnu; Host CPU: ivybridge- Ubuntu 21.04 miti GCC 10.3: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-gDeRY6/gcc-10-10.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-gDeRY6/gcc-10-10.3.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details- Musl Stable cmang 11.1.0: CPU Microcode: 0x21- Gentoo HDD GLIBC GCC 11.1: Scaling Governor: intel_cpufreq performance - CPU Microcode: 0x21- Gentoo HDD GLIBC Clang 12.0: Scaling Governor: intel_cpufreq performance - CPU Microcode: 0x21- Ubuntu 21.04 miti GCC 10.3: Scaling Governor: intel_cpufreq performance - CPU Microcode: 0x21 - Thermald 2.4.3Security Details- Musl Stable cmang 11.1.0: itlb_multihit: KVM: Mitigation of VMX unsupported + l1tf: Mitigation of PTE Inversion + mds: Vulnerable: Clear buffers attempted no microcode; SMT Host state unknown + meltdown: Mitigation of PTI + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline STIBP: disabled RSB filling + srbds: Unknown: Dependent on hypervisor status + tsx_async_abort: Not affected- Gentoo HDD GLIBC GCC 11.1: itlb_multihit: vulnerable + l1tf: Mitigation of PTE Inversion + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected- Gentoo HDD GLIBC Clang 12.0: itlb_multihit: vulnerable + l1tf: Mitigation of PTE Inversion + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected- Ubuntu 21.04 miti GCC 10.3: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected - FreeBSD 13.1 ports ivybridge: KPTI

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAMusl Stable cmang 11.1.0Gentoo HDD GLIBC GCC 11.1Gentoo HDD GLIBC Clang 12.070140210280350SE +/- 3.50, N = 5SE +/- 0.38, N = 2317.0920.3722.13gcc
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAMusl Stable cmang 11.1.0Gentoo HDD GLIBC GCC 11.1Gentoo HDD GLIBC Clang 12.060120180240300Min: 306.55 / Avg: 317.09 / Max: 324.69Min: 21.75 / Avg: 22.13 / Max: 22.51

Multiple Sequence Alignment - LSU RNA

FreeBSD 13.1 ports ivybridge: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: ./mafft: ./mafft: not found

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolverMusl Stable cmang 11.1.0Gentoo HDD GLIBC GCC 11.1Gentoo HDD GLIBC Clang 12.0Ubuntu 21.04 miti GCC 10.3FreeBSD 13.1 ports ivybridge5001000150020002500SE +/- 19.80, N = 3SE +/- 3.32, N = 3SE +/- 11.52, N = 3SE +/- 1.56, N = 3SE +/- 19.40, N = 32205.422549.612167.762523.512173.17gccgccclanggccclang
OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolverMusl Stable cmang 11.1.0Gentoo HDD GLIBC GCC 11.1Gentoo HDD GLIBC Clang 12.0Ubuntu 21.04 miti GCC 10.3FreeBSD 13.1 ports ivybridge400800120016002000Min: 2167.21 / Avg: 2205.42 / Max: 2233.54Min: 2543.41 / Avg: 2549.61 / Max: 2554.77Min: 2149.34 / Avg: 2167.76 / Max: 2188.96Min: 2520.51 / Avg: 2523.51 / Max: 2525.74Min: 2134.41 / Avg: 2173.17 / Max: 2194.05