bioinformatics-baseline
AMD Ryzen 9 5950X 16-Core testing with a ASRock B550 Taichi (P2.00 BIOS) and NVIDIA Quadro P620 2GB on Ubuntu 21.10 via the Phoronix Test Suite.
AMD Ryzen 9 5950X 16-Core
Processor: AMD Ryzen 9 5950X 16-Core @ 3.40GHz (16 Cores / 32 Threads), Motherboard: ASRock B550 Taichi (P2.00 BIOS), Chipset: AMD Starship/Matisse, Memory: 2 x 32 GB DDR4-3200MT/s Kingston, Disk: 1000GB Samsung SSD 980 PRO 1TB, Graphics: NVIDIA Quadro P620 2GB, Audio: NVIDIA GP107GL HD Audio, Monitor: AG241QG4, Network: Intel I225-V + Intel Wi-Fi 6 AX200
OS: Ubuntu 21.10, Kernel: 5.13.0-20-generic (x86_64), Desktop: GNOME Shell 40.5, Display Server: X Server 1.20.13, Display Driver: NVIDIA, OpenGL: 4.6.0, OpenCL: OpenCL 3.0 CUDA 11.4.136, Vulkan: 1.2.175, Compiler: GCC 11.2.0, File-System: zfs, Screen Resolution: 2560x1440
Kernel Notes: Transparent Huge Pages: madvise
Environment Notes: DEBUGINFOD_URLS=
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-ZPT0kp/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-ZPT0kp/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0xa201016
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected
Timed MrBayes Analysis
This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.
QMCPACK
QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. QMCPACK is an open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. QMCPACK is supported by the U.S. Department of Energy. Learn more via the OpenBenchmarking.org test page.
Input: simple-H2O
AMD Ryzen 9 5950X 16-Core: The test quit with a non-zero exit status.
Timed HMMer Search
This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.
Timed MAFFT Alignment
This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.
Himeno Benchmark
The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.
AMD Ryzen 9 5950X 16-Core
Processor: AMD Ryzen 9 5950X 16-Core @ 3.40GHz (16 Cores / 32 Threads), Motherboard: ASRock B550 Taichi (P2.00 BIOS), Chipset: AMD Starship/Matisse, Memory: 2 x 32 GB DDR4-3200MT/s Kingston, Disk: 1000GB Samsung SSD 980 PRO 1TB, Graphics: NVIDIA Quadro P620 2GB, Audio: NVIDIA GP107GL HD Audio, Monitor: AG241QG4, Network: Intel I225-V + Intel Wi-Fi 6 AX200
OS: Ubuntu 21.10, Kernel: 5.13.0-20-generic (x86_64), Desktop: GNOME Shell 40.5, Display Server: X Server 1.20.13, Display Driver: NVIDIA, OpenGL: 4.6.0, OpenCL: OpenCL 3.0 CUDA 11.4.136, Vulkan: 1.2.175, Compiler: GCC 11.2.0, File-System: zfs, Screen Resolution: 2560x1440
Kernel Notes: Transparent Huge Pages: madvise
Environment Notes: DEBUGINFOD_URLS=
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-ZPT0kp/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-ZPT0kp/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0xa201016
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected
Testing initiated at 6 November 2021 20:53 by user rolandrc.