hmmmer

Intel Core i7-4770K testing with a Gigabyte Z97X-Gaming GT (F8b BIOS) and Gigabyte AMD Intel Radeon RX 580 4GB on ManjaroLinux 21.1.6 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2110313-TJ-HMMMER29213
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
4770k
November 01 2021
  8 Minutes


hmmmerOpenBenchmarking.orgPhoronix Test SuiteIntel Core i7-4770K @ 3.90GHz (4 Cores / 8 Threads)Gigabyte Z97X-Gaming GT (F8b BIOS)Intel 4th Gen Core DRAM24GB1000GB Samsung SSD 970 EVO 1TB + 128GB SAMSUNG SSD 830 + 12000GB Western Digital WD120EMAZ-11Gigabyte AMD Intel Radeon RX 580 4GB (1250MHz)Intel Xeon E3-1200 v3/4thHP Z38cQualcomm Atheros Killer E220xManjaroLinux 21.1.65.14.10-1-MANJARO (x86_64)KDE Plasma 5.22.5X Server 1.20.134.6 Mesa 21.2.3 (LLVM 12.0.1)GCC 11.1.0 + Clang 12.0.1ext43840x1600ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionHmmmer BenchmarksSystem Logs- Transparent Huge Pages: madvise- --disable-libssp --disable-libstdcxx-pch --disable-libunwind-exceptions --disable-werror --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-install-libiberty --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++,d --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-isl --with-linker-hash-style=gnu - Scaling Governor: intel_cpufreq schedutil - CPU Microcode: 0x28- itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Mitigation of Microcode + tsx_async_abort: Not affected

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search4770k306090120150SE +/- 0.07, N = 3151.051. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi