hmmer-5900X-GUI

AMD Ryzen 9 5900X 12-Core testing with a MSI X570-A PRO (MS-7C37) v3.0 (H.E0 BIOS) and Sapphire AMD Radeon RX 6800/6800 XT / 6900 16GB on Artix rolling via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2110293-CRIM-HMMER5961
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Result
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Date
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  Test
  Duration
hmmer-5900X-GUI
October 29 2021
  5 Minutes


hmmer-5900X-GUIOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 9 5900X 12-Core @ 3.70GHz (12 Cores / 24 Threads)MSI X570-A PRO (MS-7C37) v3.0 (H.E0 BIOS)AMD Starship/Matisse32GB500GB Corsair Force MP600 + Samsung SSD 970 EVO Plus 500GB + 3001GB Seagate ST3000DM008-2DM1 + 275GB Crucial CT275MX3 + 240GB CT240BX200SSD1 + 4001GB HGST HUS726T4TALSapphire AMD Radeon RX 6800/6800 XT / 6900 16GB (2660/1000MHz)AMD Navi 21 HDMI AudioP27h-20 + 2460Realtek RTL8111/8168/8411Artix rolling5.14.14-artix1-1 (x86_64)X Server 1.20.134.6 Mesa 21.2.4 (LLVM 12.0.1)1.2.182GCC 11.1.0 + LLVM 12.0.1ext43640x1920ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDisplay ServerOpenGLVulkanCompilerFile-SystemScreen ResolutionHmmer-5900X-GUI BenchmarksSystem Logs- Transparent Huge Pages: madvise- --disable-libssp --disable-libstdcxx-pch --disable-libunwind-exceptions --disable-werror --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-install-libiberty --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++,d --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-isl --with-linker-hash-style=gnu - Scaling Governor: acpi-cpufreq performance (Boost: Enabled) - CPU Microcode: 0xa201016- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Searchhmmer-5900X-GUI20406080100SE +/- 0.02, N = 391.081. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi