TEST_CPU

2 x Intel Xeon X5670 testing with a HP ProLiant DL380 G7 (P67 BIOS) and AMD ES1000 on Ubuntu 18.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2107270-KPY4-210719473
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Bioinformatics 2 Tests
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2 x Intel Xeon E5-2678 v3
July 19 2021
  5 Hours, 41 Minutes
TEST_CPU
July 27 2021
  9 Hours, 33 Minutes
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TEST_CPUProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDisplay ServerCompilerFile-SystemScreen Resolution2 x Intel Xeon E5-2678 v3TEST_CPU2 x Intel Xeon E5-2678 v3 @ 3.30GHz (24 Cores)HP ProLiant DL380 Gen9 (P89 BIOS)Intel Xeon E7 v3/Xeon8 x 16384 MB DDR4-2133MT/s 752369-0814 x 600GB HUC106060CSS600Matrox MGA G200EHBenQ FP73G4 x Broadcom NetXtreme BCM5719 PCIeUbuntu 18.045.4.0-65-generic (x86_64)X Server 1.20.8GCC 7.5.0overlayfs1280x10242 x Intel Xeon X5670 @ 2.93GHz (12 Cores)HP ProLiant DL380 G7 (P67 BIOS)Intel 5520 I/O + ICH108 x 4096 MB DDR3-1333MT/s2 x 512GB LOGICAL VOLUMEAMD ES10004 x Broadcom NetXtreme II BCM57091024x768OpenBenchmarking.orgKernel Details- Transparent Huge Pages: madviseCompiler Details- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v Processor Details- 2 x Intel Xeon E5-2678 v3: Scaling Governor: intel_pstate powersave - CPU Microcode: 0x44- TEST_CPU: Scaling Governor: pcc-cpufreq performance - CPU Microcode: 0x1fPython Details- Python 2.7.17 + Python 3.6.9Security Details- 2 x Intel Xeon E5-2678 v3: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT disabled + mds: Mitigation of Clear buffers; SMT disabled + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW RSB filling + srbds: Not affected + tsx_async_abort: Not affected - TEST_CPU: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT disabled + mds: Vulnerable: Clear buffers attempted no microcode; SMT disabled + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW RSB filling + srbds: Not affected + tsx_async_abort: Not affected

2 x Intel Xeon E5-2678 v3 vs. TEST_CPU ComparisonPhoronix Test SuiteBaseline+68.5%+68.5%+137%+137%+205.5%+205.5%G-HPL273.9%Time To Compile107.4%AES-25679.2%AES-256 - Decrypt76.4%55.3%M.S.A - LSU RNA45.9%32.5%P.D.S30.1%Dhrystone 227.4%Elapsed Time15.3%HWB Color Space8.9%L.S.T.A.T.t.g8.3%HPC ChallengeTimed Linux Kernel CompilationBotanBotanNumpy BenchmarkTimed MAFFT AlignmentGcrypt LibraryTimed HMMer SearchBYTE Unix BenchmarkCraftyGraphicsMagickGzip Compression2 x Intel Xeon E5-2678 v3TEST_CPU

TEST_CPUbuild-linux-kernel: Time To Compilebotan: AES-256botan: AES-256 - Decryptnumpy: mafft: Multiple Sequence Alignment - LSU RNAgcrypt: hmmer: Pfam Database Searchbyte: Dhrystone 2crafty: Elapsed Timegraphics-magick: HWB Color Spacecompress-gzip: Linux Source Tree Archiving To .tar.gzhpcc: G-HPL2 x Intel Xeon E5-2678 v3TEST_CPU62.5782910.5942906.284223.6513.719288.941190.42729453835.6622552654942.700170.91867129.7951623.7791647.444144.0420.011382.943247.81623122548.8539837850446.22345.71312OpenBenchmarking.org

Timed Linux Kernel Compilation

This test times how long it takes to build the Linux kernel in a default configuration (defconfig) for the architecture being tested. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed Linux Kernel Compilation 5.10.20Time To Compile2 x Intel Xeon E5-2678 v3TEST_CPU306090120150SE +/- 0.60, N = 6SE +/- 0.71, N = 362.58129.80
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed Linux Kernel Compilation 5.10.20Time To Compile2 x Intel Xeon E5-2678 v3TEST_CPU20406080100Min: 61.63 / Avg: 62.58 / Max: 65.51Min: 129.04 / Avg: 129.79 / Max: 131.21

Botan

Botan is a BSD-licensed cross-platform open-source C++ crypto library "cryptography toolkit" that supports most publicly known cryptographic algorithms. The project's stated goal is to be "the best option for cryptography in C++ by offering the tools necessary to implement a range of practical systems, such as TLS protocol, X.509 certificates, modern AEAD ciphers, PKCS#11 and TPM hardware support, password hashing, and post quantum crypto schemes." Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMiB/s, More Is BetterBotan 2.17.3Test: AES-2562 x Intel Xeon E5-2678 v3TEST_CPU6001200180024003000SE +/- 2.07, N = 3SE +/- 0.22, N = 32910.591623.781. (CXX) g++ options: -fstack-protector -m64 -pthread -lbotan-2 -ldl -lrt
OpenBenchmarking.orgMiB/s, More Is BetterBotan 2.17.3Test: AES-2562 x Intel Xeon E5-2678 v3TEST_CPU5001000150020002500Min: 2906.47 / Avg: 2910.59 / Max: 2913.04Min: 1623.36 / Avg: 1623.78 / Max: 1624.091. (CXX) g++ options: -fstack-protector -m64 -pthread -lbotan-2 -ldl -lrt

OpenBenchmarking.orgMiB/s, More Is BetterBotan 2.17.3Test: AES-256 - Decrypt2 x Intel Xeon E5-2678 v3TEST_CPU6001200180024003000SE +/- 3.20, N = 3SE +/- 0.16, N = 32906.281647.441. (CXX) g++ options: -fstack-protector -m64 -pthread -lbotan-2 -ldl -lrt
OpenBenchmarking.orgMiB/s, More Is BetterBotan 2.17.3Test: AES-256 - Decrypt2 x Intel Xeon E5-2678 v3TEST_CPU5001000150020002500Min: 2902.53 / Avg: 2906.28 / Max: 2912.66Min: 1647.13 / Avg: 1647.44 / Max: 1647.641. (CXX) g++ options: -fstack-protector -m64 -pthread -lbotan-2 -ldl -lrt

Numpy Benchmark

This is a test to obtain the general Numpy performance. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgScore, More Is BetterNumpy Benchmark2 x Intel Xeon E5-2678 v3TEST_CPU50100150200250SE +/- 0.66, N = 3SE +/- 0.29, N = 3223.65144.04
OpenBenchmarking.orgScore, More Is BetterNumpy Benchmark2 x Intel Xeon E5-2678 v3TEST_CPU4080120160200Min: 222.97 / Avg: 223.65 / Max: 224.98Min: 143.49 / Avg: 144.04 / Max: 144.46

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNA2 x Intel Xeon E5-2678 v3TEST_CPU510152025SE +/- 0.15, N = 3SE +/- 0.09, N = 313.7220.011. (CC) gcc options: -std=c99 -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNA2 x Intel Xeon E5-2678 v3TEST_CPU510152025Min: 13.47 / Avg: 13.72 / Max: 13.97Min: 19.87 / Avg: 20.01 / Max: 20.181. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Gcrypt Library

Libgcrypt is a general purpose cryptographic library developed as part of the GnuPG project. This is a benchmark of libgcrypt's integrated benchmark and is measuring the time to run the benchmark command with a cipher/mac/hash repetition count set for 50 times as simple, high level look at the overall crypto performance of the system under test. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterGcrypt Library 1.92 x Intel Xeon E5-2678 v3TEST_CPU80160240320400SE +/- 0.04, N = 3SE +/- 0.58, N = 3288.94382.941. (CC) gcc options: -O2 -fvisibility=hidden
OpenBenchmarking.orgSeconds, Fewer Is BetterGcrypt Library 1.92 x Intel Xeon E5-2678 v3TEST_CPU70140210280350Min: 288.89 / Avg: 288.94 / Max: 289.02Min: 381.79 / Avg: 382.94 / Max: 383.551. (CC) gcc options: -O2 -fvisibility=hidden

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search2 x Intel Xeon E5-2678 v3TEST_CPU50100150200250SE +/- 0.19, N = 3SE +/- 3.15, N = 3190.43247.821. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search2 x Intel Xeon E5-2678 v3TEST_CPU4080120160200Min: 190.05 / Avg: 190.43 / Max: 190.64Min: 241.64 / Avg: 247.82 / Max: 251.951. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

BYTE Unix Benchmark

This is a test of BYTE. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgLPS, More Is BetterBYTE Unix Benchmark 3.6Computational Test: Dhrystone 22 x Intel Xeon E5-2678 v3TEST_CPU6M12M18M24M30MSE +/- 323648.63, N = 5SE +/- 190781.87, N = 1229453835.623122548.8
OpenBenchmarking.orgLPS, More Is BetterBYTE Unix Benchmark 3.6Computational Test: Dhrystone 22 x Intel Xeon E5-2678 v3TEST_CPU5M10M15M20M25MMin: 28625501.2 / Avg: 29453835.58 / Max: 30030326.4Min: 22248869.5 / Avg: 23122548.78 / Max: 23794868.7

Crafty

This is a performance test of Crafty, an advanced open-source chess engine. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNodes Per Second, More Is BetterCrafty 25.2Elapsed Time2 x Intel Xeon E5-2678 v3TEST_CPU1.3M2.6M3.9M5.2M6.5MSE +/- 13678.56, N = 3SE +/- 4184.67, N = 3622552653983781. (CC) gcc options: -pthread -lstdc++ -fprofile-use -lm
OpenBenchmarking.orgNodes Per Second, More Is BetterCrafty 25.2Elapsed Time2 x Intel Xeon E5-2678 v3TEST_CPU1.1M2.2M3.3M4.4M5.5MMin: 6198182 / Avg: 6225526.33 / Max: 6239923Min: 5390409 / Avg: 5398378.33 / Max: 54045771. (CC) gcc options: -pthread -lstdc++ -fprofile-use -lm

GraphicsMagick

This is a test of GraphicsMagick with its OpenMP implementation that performs various imaging tests on a sample 6000x4000 pixel JPEG image. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.33Operation: HWB Color Space2 x Intel Xeon E5-2678 v3TEST_CPU120240360480600SE +/- 4.93, N = 3SE +/- 4.17, N = 85495041. (CC) gcc options: -fopenmp -O2 -pthread -ljpeg -lz -lm -lpthread
OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.33Operation: HWB Color Space2 x Intel Xeon E5-2678 v3TEST_CPU100200300400500Min: 541 / Avg: 549 / Max: 558Min: 483 / Avg: 504 / Max: 5191. (CC) gcc options: -fopenmp -O2 -pthread -ljpeg -lz -lm -lpthread

Gzip Compression

This test measures the time needed to archive/compress two copies of the Linux 4.13 kernel source tree using Gzip compression. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterGzip CompressionLinux Source Tree Archiving To .tar.gz2 x Intel Xeon E5-2678 v3TEST_CPU1020304050SE +/- 0.07, N = 3SE +/- 0.12, N = 342.7046.22
OpenBenchmarking.orgSeconds, Fewer Is BetterGzip CompressionLinux Source Tree Archiving To .tar.gz2 x Intel Xeon E5-2678 v3TEST_CPU918273645Min: 42.55 / Avg: 42.7 / Max: 42.79Min: 45.98 / Avg: 46.22 / Max: 46.36

HPC Challenge

HPC Challenge (HPCC) is a cluster-focused benchmark consisting of the HPL Linpack TPP benchmark, DGEMM, STREAM, PTRANS, RandomAccess, FFT, and communication bandwidth and latency. This HPC Challenge test profile attempts to ship with standard yet versatile configuration/input files though they can be modified. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS, More Is BetterHPC Challenge 1.5.0Test / Class: G-HPL2 x Intel Xeon E5-2678 v3TEST_CPU4080120160200SE +/- 1.62, N = 3SE +/- 1.25, N = 9170.9245.711. (CC) gcc options: -lblas -lm -pthread -lmpi -fomit-frame-pointer -funroll-loops2. ATLAS + Open MPI 2.1.1
OpenBenchmarking.orgGFLOPS, More Is BetterHPC Challenge 1.5.0Test / Class: G-HPL2 x Intel Xeon E5-2678 v3TEST_CPU306090120150Min: 168.92 / Avg: 170.92 / Max: 174.12Min: 38.32 / Avg: 45.71 / Max: 49.241. (CC) gcc options: -lblas -lm -pthread -lmpi -fomit-frame-pointer -funroll-loops2. ATLAS + Open MPI 2.1.1