Parallel Bioindormatic Intel Core i7-3615QM testing with a Apple Mac-C3EC7CD22292981F (421.0.0.0.0 BIOS) and NVIDIA GeForce GT 650M 1GB on Ubuntu 21.04 via the Phoronix Test Suite.
HTML result view exported from: https://openbenchmarking.org/result/2106214-IB-2105163IB23 .
Parallel Bioindormatic Processor Motherboard Memory Disk Graphics Chipset Audio Monitor Network OS Kernel Compiler File-System Screen Resolution System Layer Desktop Display Server Display Driver OpenGL OpenCL Vulkan Musl Stable cmang 11.1.0 Gentoo HDD GLIBC GCC 11.1 Gentoo HDD GLIBC Clang 12.0 Ubuntu 21.04 miti GCC 10.3 Intel Core i7-3615QM (8 Cores) Parallels Software Virtual (16.1.2 49151 BIOS) 4096MB 69GB Gentoo-Musl-0 SS virtio_gpudrmfb Gentoo/Linux 5.10.27-gentoo-x86_64-gcc (x86_64) GCC 10.2.0 ext4 1008x759 Parallels Virtualization Intel Core i7-3615QM @ 3.30GHz (4 Cores / 8 Threads) Apple Mac-C3EC7CD22292981F (421.0.0.0.0 BIOS) Intel 3rd Gen Core DRAM 8GB 251GB APPLE SSD SM256E + 500GB Generic NVIDIA GeForce GT 650M 1GB Cirrus Logic CS4206 Color LCD Broadcom NetXtreme BCM57786 PCIe + Broadcom BCM4331 802.11a/b/g/n 5.12.4-gentoo-x86_64-v2 (x86_64) MATE 1.24.1 X Server 1.20.11 NVIDIA 465.27 4.6.0 GCC 11.1.0 + Clang 12.0.0 + LLVM 12.0.0 btrfs 2880x1800 Clang 12.0.0 + GCC 11.1.0 + LLVM 12.0.0 251GB APPLE SSD SM256E Broadcom NetXtreme BCM57786 PCIe + Broadcom NetXtreme BCM57762 PCIe + Broadcom BCM4331 802.11a/b/g/n Ubuntu 21.04 5.11.0-18-generic (x86_64) NVIDIA 460.80 OpenCL 1.2 CUDA 11.2.162 1.2.155 GCC 10.3.0 + Clang 12.0.0-1ubuntu1 + LLVM 12.0.0 zfs OpenBenchmarking.org Kernel Details - Musl Stable cmang 11.1.0: Transparent Huge Pages: always - Gentoo HDD GLIBC GCC 11.1: i915.fastboot=1 - Transparent Huge Pages: always - Gentoo HDD GLIBC Clang 12.0: i915.fastboot=1 - Transparent Huge Pages: always - Ubuntu 21.04 miti GCC 10.3: Transparent Huge Pages: madvise Compiler Details - Musl Stable cmang 11.1.0: --bindir=/usr/x86_64-gentoo-linux-musl/gcc-bin/10.2.0 --build=x86_64-gentoo-linux-musl --datadir=/usr/share/gcc-data/x86_64-gentoo-linux-musl/10.2.0 --disable-fixed-point --disable-libada --disable-libsanitizer --disable-libssp --disable-libstdcxx-pch --disable-libvtv --disable-multilib --disable-nls --disable-systemtap --disable-vtable-verify --disable-werror --enable-__cxa_atexit --enable-checking=release --enable-default-pie --enable-default-ssp --enable-esp --enable-languages=c,c++,fortran --enable-libgomp --enable-libstdcxx-time --enable-lto --enable-obsolete --enable-secureplt --enable-shared --enable-targets=all --enable-threads=posix --host=x86_64-gentoo-linux-musl --includedir=/usr/lib/gcc/x86_64-gentoo-linux-musl/10.2.0/include --mandir=/usr/share/gcc-data/x86_64-gentoo-linux-musl/10.2.0/man --with-multilib-list=m64 --with-python-dir=/share/gcc-data/x86_64-gentoo-linux-musl/10.2.0/python --with-zstd --without-isl - Gentoo HDD GLIBC Clang 12.0: Optimized build; Default target: x86_64-pc-linux-gnu; Host CPU: ivybridge - Ubuntu 21.04 miti GCC 10.3: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-gDeRY6/gcc-10-10.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-gDeRY6/gcc-10-10.3.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details - Musl Stable cmang 11.1.0: CPU Microcode: 0x21 - Gentoo HDD GLIBC GCC 11.1: Scaling Governor: intel_cpufreq performance - CPU Microcode: 0x21 - Gentoo HDD GLIBC Clang 12.0: Scaling Governor: intel_cpufreq performance - CPU Microcode: 0x21 - Ubuntu 21.04 miti GCC 10.3: Scaling Governor: intel_cpufreq performance - CPU Microcode: 0x21 - Thermald 2.4.3 Security Details - Musl Stable cmang 11.1.0: itlb_multihit: KVM: Mitigation of VMX unsupported + l1tf: Mitigation of PTE Inversion + mds: Vulnerable: Clear buffers attempted no microcode; SMT Host state unknown + meltdown: Mitigation of PTI + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline STIBP: disabled RSB filling + srbds: Unknown: Dependent on hypervisor status + tsx_async_abort: Not affected - Gentoo HDD GLIBC GCC 11.1: itlb_multihit: vulnerable + l1tf: Mitigation of PTE Inversion + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected - Gentoo HDD GLIBC Clang 12.0: itlb_multihit: vulnerable + l1tf: Mitigation of PTE Inversion + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected - Ubuntu 21.04 miti GCC 10.3: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Vulnerable: No microcode + tsx_async_abort: Not affected
Parallel Bioindormatic mafft: Multiple Sequence Alignment - LSU RNA himeno: Poisson Pressure Solver Musl Stable cmang 11.1.0 Gentoo HDD GLIBC GCC 11.1 Gentoo HDD GLIBC Clang 12.0 Ubuntu 21.04 miti GCC 10.3 317.088 2205.420383 20.367 2549.610846 22.127 2167.755670 2523.509706 OpenBenchmarking.org
Timed MAFFT Alignment Multiple Sequence Alignment - LSU RNA OpenBenchmarking.org Seconds, Fewer Is Better Timed MAFFT Alignment 7.471 Multiple Sequence Alignment - LSU RNA Musl Stable cmang 11.1.0 Gentoo HDD GLIBC GCC 11.1 Gentoo HDD GLIBC Clang 12.0 70 140 210 280 350 SE +/- 3.50, N = 5 SE +/- 0.38, N = 2 317.09 20.37 22.13 gcc
Himeno Benchmark Poisson Pressure Solver OpenBenchmarking.org MFLOPS, More Is Better Himeno Benchmark 3.0 Poisson Pressure Solver Musl Stable cmang 11.1.0 Gentoo HDD GLIBC GCC 11.1 Gentoo HDD GLIBC Clang 12.0 Ubuntu 21.04 miti GCC 10.3 500 1000 1500 2000 2500 SE +/- 19.80, N = 3 SE +/- 3.32, N = 3 SE +/- 11.52, N = 3 SE +/- 1.56, N = 3 2205.42 2549.61 2167.76 2523.51 gcc gcc clang gcc
Phoronix Test Suite v10.8.4