bioinformatics-40c-dedicated
Biofinformatics 40c Dedicated
bioinformatics-40c-dedicated
Processor: 2 x Intel Xeon (Skylake IBRS) (40 Cores), Motherboard: OpenStack Foundation Nova v21.0.0 (1.13.0-1ubuntu1.1 BIOS), Chipset: Intel 440FX 82441FX PMC, Memory: 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 8192 MB RAM, Disk: 50GB, Graphics: Cirrus Logic GD 5446, Network: Red Hat Virtio device
OS: Ubuntu 20.04, Kernel: 5.4.0-74-generic (x86_64), Compiler: GCC 9.3.0, File-System: ext4, Screen Resolution: 1024x768, System Layer: KVM
Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: CPU Microcode: 0x1
Security Notes: itlb_multihit: Not affected + l1tf: Mitigation of PTE Inversion; VMX: flush not necessary SMT disabled + mds: Mitigation of Clear buffers; SMT Host state unknown + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT Host state unknown
Himeno Benchmark
The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.
Timed MrBayes Analysis
This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.
Timed HMMer Search
This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.
Timed MAFFT Alignment
This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.
QMCPACK
QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. QMCPACK is an open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. QMCPACK is supported by the U.S. Department of Energy. Learn more via the OpenBenchmarking.org test page.
bioinformatics-40c-dedicated
Processor: 2 x Intel Xeon (Skylake IBRS) (40 Cores), Motherboard: OpenStack Foundation Nova v21.0.0 (1.13.0-1ubuntu1.1 BIOS), Chipset: Intel 440FX 82441FX PMC, Memory: 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 16384 MB + 8192 MB RAM, Disk: 50GB, Graphics: Cirrus Logic GD 5446, Network: Red Hat Virtio device
OS: Ubuntu 20.04, Kernel: 5.4.0-74-generic (x86_64), Compiler: GCC 9.3.0, File-System: ext4, Screen Resolution: 1024x768, System Layer: KVM
Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: CPU Microcode: 0x1
Security Notes: itlb_multihit: Not affected + l1tf: Mitigation of PTE Inversion; VMX: flush not necessary SMT disabled + mds: Mitigation of Clear buffers; SMT Host state unknown + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT Host state unknown
Testing initiated at 3 June 2021 11:23 by user root.