epsilon-all-f

2 x Intel Xeon E5-2630 v4 testing with a Supermicro X10DRT-H v1.02 (2.0a BIOS) and ASPEED on Debian 10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2106015-IB-EPSILONAL41
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epsilon112
May 31
  4 Hours, 14 Minutes
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epsilon-all-fOpenBenchmarking.orgPhoronix Test Suite 10.4.02 x Intel Xeon E5-2630 v4 @ 3.10GHz (20 Cores / 40 Threads)Supermicro X10DRT-H v1.02 (2.0a BIOS)Intel Xeon E7 v4/Xeon8 x 16384 MB DDR4-2400MT/s Samsung M393A2G40EB1-CRC2 x 1000GB Western Digital WD1003FBYZ-0ASPEED2 x Intel I350Debian 104.19.0-16-amd64 (x86_64)GCC 8.3.0ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionEpsilon-all-f BenchmarksSystem Logs- Transparent Huge Pages: always- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate powersave - CPU Microcode: 0xb000038- itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT vulnerable

epsilon-all-fminife: Smallcloverleaf: Lagrangian-Eulerian Hydrodynamicsnamd: ATPase Simulation - 327,506 Atomsamg: ffte: N=256, 3D Complex FFT Routinefftw: Stock - 1D FFT Size 64fftw: Stock - 2D FFT Size 64fftw: Stock - 1D FFT Size 256fftw: Stock - 2D FFT Size 256fftw: Stock - 1D FFT Size 1024fftw: Stock - 1D FFT Size 4096fftw: Stock - 2D FFT Size 1024fftw: Stock - 2D FFT Size 4096fftw: Float + SSE - 1D FFT Size 64fftw: Float + SSE - 2D FFT Size 64fftw: Float + SSE - 1D FFT Size 256fftw: Float + SSE - 2D FFT Size 256fftw: Float + SSE - 1D FFT Size 1024fftw: Float + SSE - 1D FFT Size 4096fftw: Float + SSE - 2D FFT Size 1024fftw: Float + SSE - 2D FFT Size 4096pennant: sedovbigpennant: leblancbigmrbayes: Primate Phylogeny Analysishmmer: Pfam Database Searchincompact3d: input.i3d 129 Cells Per Directionincompact3d: input.i3d 193 Cells Per Directionmafft: Multiple Sequence Alignment - LSU RNAmocassin: Dust 2D tau100.0openfoam: Motorbike 30Mqe: AUSURF112lulesh: mt-dgemm: Sustained Floating-Point Ratehimeno: Poisson Pressure Solversmallpt: Global Illumination Renderer; 128 Samplesgromacs: MPI CPU - water_GMX50_bareoctave-benchmark: kripke: epsilon11211104.5354.871.2557971504663351400.9194318995499.74969.85067.54461.44976.34712.44554.33674.710533.42478725692230733864630226249601576360.1415929.03462258.343174.47215.112713258.060775715.610278216.062295.286171.64487.5748023129.2938998.4191.41511.69061311273OpenBenchmarking.org

miniFE

MiniFE Finite Element is an application for unstructured implicit finite element codes. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgCG Mflops, More Is BetterminiFE 2.2Problem Size: Smallepsilon1122K4K6K8K10KSE +/- 199.83, N = 1511104.531. (CXX) g++ options: -O3 -fopenmp -pthread -lmpi_cxx -lmpi

CloverLeaf

CloverLeaf is a Lagrangian-Eulerian hydrodynamics benchmark. This test profile currently makes use of CloverLeaf's OpenMP version and benchmarked with the clover_bm.in input file (Problem 5). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCloverLeafLagrangian-Eulerian Hydrodynamicsepsilon1121224364860SE +/- 0.33, N = 354.871. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atomsepsilon1120.28260.56520.84781.13041.413SE +/- 0.00236, N = 31.25579

Algebraic Multi-Grid Benchmark

AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFigure Of Merit, More Is BetterAlgebraic Multi-Grid Benchmark 1.2epsilon112150M300M450M600M750MSE +/- 494396.69, N = 37150466331. (CC) gcc options: -lparcsr_ls -lparcsr_mv -lseq_mv -lIJ_mv -lkrylov -lHYPRE_utilities -lm -fopenmp -pthread -lmpi

FFTE

FFTE is a package by Daisuke Takahashi to compute Discrete Fourier Transforms of 1-, 2- and 3- dimensional sequences of length (2^p)*(3^q)*(5^r). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 7.0N=256, 3D Complex FFT Routineepsilon11211K22K33K44K55KSE +/- 418.24, N = 951400.921. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp

FFTW

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 64epsilon11212002400360048006000SE +/- 8.22, N = 35499.71. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 64epsilon11211002200330044005500SE +/- 49.04, N = 54969.81. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 256epsilon11211002200330044005500SE +/- 4.24, N = 35067.51. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 256epsilon11210002000300040005000SE +/- 16.28, N = 34461.41. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 1024epsilon11211002200330044005500SE +/- 6.70, N = 34976.31. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 4096epsilon11210002000300040005000SE +/- 11.23, N = 34712.41. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 1024epsilon11210002000300040005000SE +/- 23.51, N = 34554.31. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 4096epsilon1128001600240032004000SE +/- 5.45, N = 33674.71. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 64epsilon1122K4K6K8K10KSE +/- 175.31, N = 1510533.41. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 64epsilon1125K10K15K20K25KSE +/- 86.81, N = 3247871. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 256epsilon1126K12K18K24K30KSE +/- 278.43, N = 15256921. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 256epsilon1125K10K15K20K25KSE +/- 216.83, N = 3230731. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 1024epsilon1128K16K24K32K40KSE +/- 142.04, N = 3386461. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 4096epsilon1126K12K18K24K30KSE +/- 81.54, N = 3302261. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 1024epsilon1125K10K15K20K25KSE +/- 134.02, N = 3249601. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 4096epsilon1123K6K9K12K15KSE +/- 142.82, N = 3157631. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

Pennant

Pennant is an application focused on hydrodynamics on general unstructured meshes in 2D. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: sedovbigepsilon1121326395265SE +/- 0.04, N = 360.141. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: leblancbigepsilon112714212835SE +/- 0.04, N = 329.031. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisepsilon11260120180240300SE +/- 0.85, N = 3258.341. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm -lreadline

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Searchepsilon1124080120160200SE +/- 0.16, N = 3174.471. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Xcompact3d Incompact3d

Xcompact3d Incompact3d is a Fortran-MPI based, finite difference high-performance code for solving the incompressible Navier-Stokes equation and as many as you need scalar transport equations. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterXcompact3d Incompact3d 2021-03-11Input: input.i3d 129 Cells Per Directionepsilon11248121620SE +/- 0.09, N = 315.111. (F9X) gfortran options: -cpp -O2 -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

OpenBenchmarking.orgSeconds, Fewer Is BetterXcompact3d Incompact3d 2021-03-11Input: input.i3d 193 Cells Per Directionepsilon1121326395265SE +/- 0.14, N = 358.061. (F9X) gfortran options: -cpp -O2 -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAepsilon11248121620SE +/- 0.04, N = 315.611. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Monte Carlo Simulations of Ionised Nebulae

Mocassin is the Monte Carlo Simulations of Ionised Nebulae. MOCASSIN is a fully 3D or 2D photoionisation and dust radiative transfer code which employs a Monte Carlo approach to the transfer of radiation through media of arbitrary geometry and density distribution. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterMonte Carlo Simulations of Ionised Nebulae 2019-03-24Input: Dust 2D tau100.0epsilon11260120180240300SE +/- 0.00, N = 32781. (F9X) gfortran options: -cpp -Jsource/ -ffree-line-length-0 -lm -std=legacy -O3 -O2 -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

OpenFOAM

OpenFOAM is the leading free, open source software for computational fluid dynamics (CFD). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterOpenFOAM 8Input: Motorbike 30Mepsilon11250100150200250SE +/- 0.44, N = 3216.061. (CXX) g++ options: -std=c++11 -m64 -O3 -ftemplate-depth-100 -fPIC -fuse-ld=bfd -Xlinker --add-needed --no-as-needed -lfoamToVTK -ldynamicMesh -llagrangian -lgenericPatchFields -lfileFormats -lOpenFOAM -ldl -lm

Quantum ESPRESSO

Quantum ESPRESSO is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterQuantum ESPRESSO 6.7Input: AUSURF112epsilon1125001000150020002500SE +/- 0.79, N = 32295.281. (F9X) gfortran options: -lopenblas -lFoX_dom -lFoX_sax -lFoX_wxml -lFoX_common -lFoX_utils -lFoX_fsys -lfftw3 -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

LULESH

LULESH is the Livermore Unstructured Lagrangian Explicit Shock Hydrodynamics. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgz/s, More Is BetterLULESH 2.0.3epsilon11213002600390052006500SE +/- 10.36, N = 36171.641. (CXX) g++ options: -O3 -fopenmp -lm -pthread -lmpi_cxx -lmpi

ACES DGEMM

This is a multi-threaded DGEMM benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOP/s, More Is BetterACES DGEMM 1.0Sustained Floating-Point Rateepsilon112246810SE +/- 0.085216, N = 47.5748021. (CC) gcc options: -O3 -march=native -fopenmp

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverepsilon1127001400210028003500SE +/- 3.55, N = 33129.291. (CC) gcc options: -O3 -mavx2

Smallpt

Smallpt is a C++ global illumination renderer written in less than 100 lines of code. Global illumination is done via unbiased Monte Carlo path tracing and there is multi-threading support via the OpenMP library. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSmallpt 1.0Global Illumination Renderer; 128 Samplesepsilon112246810SE +/- 0.022, N = 38.4191. (CXX) g++ options: -fopenmp -O3

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing with the water_GMX50 data. This test profile allows selecting between CPU and GPU-based GROMACS builds. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2021.2Implementation: MPI CPU - Input: water_GMX50_bareepsilon1120.31840.63680.95521.27361.592SE +/- 0.003, N = 31.4151. (CXX) g++ options: -O3 -pthread

GNU Octave Benchmark

This test profile measures how long it takes to complete several reference GNU Octave files via octave-benchmark. GNU Octave is used for numerical computations and is an open-source alternative to MATLAB. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterGNU Octave Benchmark 4.4.1epsilon1123691215SE +/- 0.04, N = 511.69

Kripke

Kripke is a simple, scalable, 3D Sn deterministic particle transport code. Its primary purpose is to research how data layout, programming paradigms and architectures effect the implementation and performance of Sn transport. Kripke is developed by LLNL. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgThroughput FoM, More Is BetterKripke 1.2.4epsilon11213M26M39M52M65MSE +/- 1048644.68, N = 15613112731. (CXX) g++ options: -O3 -fopenmp