epsilon-all2

2 x Intel Xeon E5-2630 v4 testing with a Supermicro X10DRT-H v1.02 (2.0a BIOS) and ASPEED on Debian 10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2105319-IB-EPSILONAL88
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epsilon112
May 31
  3 Hours, 11 Minutes
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epsilon-all2OpenBenchmarking.orgPhoronix Test Suite 10.6.12 x Intel Xeon E5-2630 v4 @ 3.10GHz (20 Cores / 40 Threads)Supermicro X10DRT-H v1.02 (2.0a BIOS)Intel Xeon E7 v4/Xeon8 x 16384 MB DDR4-2400MT/s Samsung M393A2G40EB1-CRC2 x 1000GB Western Digital WD1003FBYZ-0ASPEED2 x Intel I350Debian 104.19.0-16-amd64 (x86_64)GCC 8.3.0ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionEpsilon-all2 BenchmarksSystem Logs- Transparent Huge Pages: always- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate powersave - CPU Microcode: 0xb000038- itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT vulnerable

epsilon-all2octave-benchmark: gromacs: MPI CPU - water_GMX50_baresmallpt: Global Illumination Renderer; 128 Sampleshimeno: Poisson Pressure Solvermt-dgemm: Sustained Floating-Point Ratelulesh: qe: AUSURF112openfoam: Motorbike 30Mmocassin: Dust 2D tau100.0mafft: Multiple Sequence Alignment - LSU RNAincompact3d: input.i3d 193 Cells Per Directionincompact3d: input.i3d 129 Cells Per Directionhmmer: Pfam Database Searchamg: namd: ATPase Simulation - 327,506 Atomskripke: epsilon11211.5881.4088.3823136.2620357.5213096128.37982298.77215.7227815.69958.088221214.9024264174.8837149525671.2539261170736OpenBenchmarking.org

GNU Octave Benchmark

This test profile measures how long it takes to complete several reference GNU Octave files via octave-benchmark. GNU Octave is used for numerical computations and is an open-source alternative to MATLAB. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterGNU Octave Benchmark 4.4.1epsilon1123691215SE +/- 0.03, N = 511.59

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing with the water_GMX50 data. This test profile allows selecting between CPU and GPU-based GROMACS builds. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2021.2Implementation: MPI CPU - Input: water_GMX50_bareepsilon1120.31680.63360.95041.26721.584SE +/- 0.006, N = 31.4081. (CXX) g++ options: -O3 -pthread

Smallpt

Smallpt is a C++ global illumination renderer written in less than 100 lines of code. Global illumination is done via unbiased Monte Carlo path tracing and there is multi-threading support via the OpenMP library. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSmallpt 1.0Global Illumination Renderer; 128 Samplesepsilon112246810SE +/- 0.016, N = 38.3821. (CXX) g++ options: -fopenmp -O3

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverepsilon1127001400210028003500SE +/- 2.61, N = 33136.261. (CC) gcc options: -O3 -mavx2

ACES DGEMM

This is a multi-threaded DGEMM benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOP/s, More Is BetterACES DGEMM 1.0Sustained Floating-Point Rateepsilon112246810SE +/- 0.068358, N = 157.5213091. (CC) gcc options: -O3 -march=native -fopenmp

LULESH

LULESH is the Livermore Unstructured Lagrangian Explicit Shock Hydrodynamics. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgz/s, More Is BetterLULESH 2.0.3epsilon11213002600390052006500SE +/- 69.74, N = 36128.381. (CXX) g++ options: -O3 -fopenmp -lm -pthread -lmpi_cxx -lmpi

Quantum ESPRESSO

Quantum ESPRESSO is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterQuantum ESPRESSO 6.7Input: AUSURF112epsilon1125001000150020002500SE +/- 3.19, N = 32298.771. (F9X) gfortran options: -lopenblas -lFoX_dom -lFoX_sax -lFoX_wxml -lFoX_common -lFoX_utils -lFoX_fsys -lfftw3 -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

OpenFOAM

OpenFOAM is the leading free, open source software for computational fluid dynamics (CFD). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterOpenFOAM 8Input: Motorbike 30Mepsilon11250100150200250SE +/- 0.09, N = 3215.721. (CXX) g++ options: -std=c++11 -m64 -O3 -ftemplate-depth-100 -fPIC -fuse-ld=bfd -Xlinker --add-needed --no-as-needed -lfoamToVTK -ldynamicMesh -llagrangian -lgenericPatchFields -lfileFormats -lOpenFOAM -ldl -lm

Monte Carlo Simulations of Ionised Nebulae

Mocassin is the Monte Carlo Simulations of Ionised Nebulae. MOCASSIN is a fully 3D or 2D photoionisation and dust radiative transfer code which employs a Monte Carlo approach to the transfer of radiation through media of arbitrary geometry and density distribution. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterMonte Carlo Simulations of Ionised Nebulae 2019-03-24Input: Dust 2D tau100.0epsilon11260120180240300SE +/- 0.33, N = 32781. (F9X) gfortran options: -cpp -Jsource/ -ffree-line-length-0 -lm -std=legacy -O3 -O2 -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAepsilon11248121620SE +/- 0.08, N = 315.701. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Xcompact3d Incompact3d

Xcompact3d Incompact3d is a Fortran-MPI based, finite difference high-performance code for solving the incompressible Navier-Stokes equation and as many as you need scalar transport equations. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterXcompact3d Incompact3d 2021-03-11Input: input.i3d 193 Cells Per Directionepsilon1121326395265SE +/- 0.02, N = 358.091. (F9X) gfortran options: -cpp -O2 -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

OpenBenchmarking.orgSeconds, Fewer Is BetterXcompact3d Incompact3d 2021-03-11Input: input.i3d 129 Cells Per Directionepsilon11248121620SE +/- 0.10, N = 314.901. (F9X) gfortran options: -cpp -O2 -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Searchepsilon1124080120160200SE +/- 0.19, N = 3174.881. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Algebraic Multi-Grid Benchmark

AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFigure Of Merit, More Is BetterAlgebraic Multi-Grid Benchmark 1.2epsilon112150M300M450M600M750MSE +/- 301498.68, N = 37149525671. (CC) gcc options: -lparcsr_ls -lparcsr_mv -lseq_mv -lIJ_mv -lkrylov -lHYPRE_utilities -lm -fopenmp -pthread -lmpi

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atomsepsilon1120.28210.56420.84631.12841.4105SE +/- 0.00122, N = 31.25392

Kripke

Kripke is a simple, scalable, 3D Sn deterministic particle transport code. Its primary purpose is to research how data layout, programming paradigms and architectures effect the implementation and performance of Sn transport. Kripke is developed by LLNL. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgThroughput FoM, More Is BetterKripke 1.2.4epsilon11213M26M39M52M65MSE +/- 994346.33, N = 15611707361. (CXX) g++ options: -O3 -fopenmp