raven may

AMD Ryzen 5 3400G testing with a ASUS PRIME B450M-A (2006 BIOS) and ASUS AMD Picasso 2GB on Ubuntu 19.10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2105054-HA-RAVENMAY165
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Bioinformatics 3 Tests
C/C++ Compiler Tests 2 Tests
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HPC - High Performance Computing 3 Tests
MPI Benchmarks 2 Tests
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May 05 2021
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May 05 2021
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May 05 2021
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raven mayProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverVulkanCompilerFile-SystemScreen Resolution123AMD Ryzen 5 3400G @ 3.70GHz (4 Cores / 8 Threads)ASUS PRIME B450M-A (2006 BIOS)AMD Raven/Raven22 x 8192 MB DDR4-3000MT/s CRUCIAL29GB INTEL MEMPEK1W032GA + 4 x 6001GB Seagate ST6000VN0033-2EEASUS AMD Picasso 2GB (1400/1500MHz)AMD Raven/Raven2/FenghuangSyncMasterRealtek RTL8111/8168/8411Ubuntu 19.105.3.0-46-generic (x86_64)GNOME Shell 3.34.1X Serverasus1.1.107GCC 9.2.1 20191008ext41280x800OpenBenchmarking.orgKernel Details- Transparent Huge Pages: madviseCompiler Details- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details- Scaling Governor: acpi-cpufreq ondemand (Boost: Enabled) - CPU Microcode: 0x8108109Security Details- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + tsx_async_abort: Not affected

123Result OverviewPhoronix Test Suite100%102%103%105%QMCPACKTimed MrBayes AnalysisTimed HMMer Searchsimple-H2OP.P.AP.D.S

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysis123306090120150SE +/- 0.93, N = 3SE +/- 0.95, N = 3SE +/- 5.57, N = 12129.02128.57134.761. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msse4a -msha -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysis123306090120150Min: 127.85 / Avg: 129.02 / Max: 130.87Min: 126.95 / Avg: 128.57 / Max: 130.24Min: 127.61 / Avg: 134.76 / Max: 195.881. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msse4a -msha -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. QMCPACK is an open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. QMCPACK is supported by the U.S. Department of Energy. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.11Input: simple-H2O123714212835SE +/- 1.00, N = 15SE +/- 0.10, N = 3SE +/- 0.25, N = 329.1827.6827.481. (CXX) g++ options: -fopenmp -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -march=native -O3 -fomit-frame-pointer -ffast-math -lm -pthread
OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.11Input: simple-H2O123612182430Min: 27.44 / Avg: 29.18 / Max: 40.72Min: 27.54 / Avg: 27.68 / Max: 27.88Min: 27.04 / Avg: 27.48 / Max: 27.91. (CXX) g++ options: -fopenmp -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -march=native -O3 -fomit-frame-pointer -ffast-math -lm -pthread

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search123306090120150SE +/- 0.64, N = 3SE +/- 0.48, N = 3SE +/- 0.68, N = 3123.36123.74123.851. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search12320406080100Min: 122.52 / Avg: 123.36 / Max: 124.61Min: 123.18 / Avg: 123.74 / Max: 124.7Min: 122.51 / Avg: 123.85 / Max: 124.731. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi