hmmer1

2 x Intel Xeon Gold 6330 testing with a Supermicro X12DPi-N6 v1.00 (1.0a BIOS) and ASPEED on CentOS Linux 8 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2104025-NE-HMMER119286
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hmmer1OpenBenchmarking.orgPhoronix Test Suite 10.4.0m12 x Intel Xeon Gold 6330 @ 3.10GHz (56 Cores)Supermicro X12DPi-N6 v1.00 (1.0a BIOS)Intel Device 099816 x 32 GB DDR4-2933MT/s Samsung M393A4K40CB2-CVF2 x 1920GB INTEL SSDSC2KB01 + 12 x 8002GB HGST HUS728T8TALASPEED2 x Intel I350 + 4 x Intel 82599ES 10-Gigabit SFI/SFP+CentOS Linux 84.18.0-80.el8.x86_64 (x86_64)GCC 8.3.1 20191121xfs1024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionHmmer1 BenchmarksSystem Logs- --build=x86_64-redhat-linux --disable-libmpx --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-cet --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,fortran,lto --enable-multilib --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-gcc-major-version-only --with-isl --with-linker-hash-style=gnu --with-tune=generic --without-cuda-driver - Scaling Governor: acpi-cpufreq performance - CPU Microcode: 0xd0001b2- SELinux + l1tf: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database Search2 x Intel Xeon Gold 63304080120160200SE +/- 0.07, N = 3180.691. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm