Namd-0323-1

2 x AMD EPYC 7763 64-Core testing with a AMD DAYTONA_X (RYM1001D BIOS) and ASPEED on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2103239-HA-NAMD0323140
Jump To Table - Results

Statistics

Remove Outliers Before Calculating Averages

Graph Settings

Prefer Vertical Bar Graphs

Table

Show Detailed System Result Table

Run Management

Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
2 x AMD EPYC 7763 64-Core
March 23 2021
  5 Minutes


Namd-0323-1OpenBenchmarking.orgPhoronix Test Suite2 x AMD EPYC 7763 64-Core @ 2.45GHz (128 Cores / 256 Threads)AMD DAYTONA_X (RYM1001D BIOS)AMD Starship/Matisse16 x 32 GB DDR4-3200MT/s 36ASF4G72PZ-3G2E2256GB Samsung SSD 860ASPEED2 x Mellanox MT27710Ubuntu 20.045.4.0-67-generic (x86_64)GCC 10.2.0ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionNamd-0323-1 BenchmarksSystem Logs- Transparent Huge Pages: madvise- Scaling Governor: acpi-cpufreq ondemand (Boost: Enabled) - CPU Microcode: 0xa001119 - itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atoms2 x AMD EPYC 7763 64-Core0.05210.10420.15630.20840.2605SE +/- 0.00156, N = 150.23149