namd-test

2 x Intel Xeon E5-2697 v4 testing with a Intel S2600WT2R (SE5C610.86B.01.01.0028.121720182203 BIOS) and mgadrmfb on CentOS Linux 7 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2103159-HA-2103151HA28
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
Intel Core i5-6400
March 15 2021
  13 Minutes
Intel Xeon Gold 5218
March 15 2021
  4 Minutes
E5-2697-test
March 15 2021
  4 Minutes
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  7 Minutes

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namd-testProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkMonitorOSKernelDisplay DriverCompilerFile-SystemScreen ResolutionDesktopDisplay ServerOpenGLIntel Core i5-6400Intel Xeon Gold 5218E5-2697-testIntel Core i5-6400 @ 3.30GHz (4 Cores)Dell 0XJ8C4 (2.6.1 BIOS)Intel Xeon E3-1200 v5/E3-15002 x 4096 MB DDR4-2400MT/s IM44GU48N24-FFFHA01000GB Seagate ST1000DM003-1ER1Intel HD 530 (950MHz)Realtek ALC3861Intel I219-VCentOS Linux 73.10.0-957.27.2.el7.x86_64 (x86_64)intelGCC 4.8.5 20150623xfs1920x1080Intel Xeon Gold 5218 @ 2.30GHz (16 Cores / 32 Threads)Supermicro X11DDW-L v1.11 (3.1 BIOS)Intel Sky Lake-E DMI3 Registers2 x 8192 MB DDR4-2400MT/s 18ASF1G72PZ-2G3B1QG240GB VK000240GWJPDGDI Generic2 x Intel X722 for 1GbE3.10.0-957.el7.x86_64 (x86_64)GNOME Shell 3.28.3X Server 1.20.11.1.01536x8242 x Intel Xeon E5-2697 v4 @ 3.60GHz (36 Cores / 72 Threads)Intel S2600WT2R (SE5C610.86B.01.01.0028.121720182203 BIOS)2 x 8192 MB DDR4-2400MT/s Micron 18ASF1G72PZ-2G3B1QG240GB INTEL SSDSC2KB24mgadrmfbSMB1920NW1440x900OpenBenchmarking.orgKernel Details- Transparent Huge Pages: alwaysProcessor Details- Intel Core i5-6400: Scaling Governor: intel_pstate performance - CPU Microcode: 0xcc- Intel Xeon Gold 5218: Scaling Governor: acpi-cpufreq conservative (Boost: Enabled) - CPU Microcode: 0x4000024- E5-2697-test: Scaling Governor: intel_pstate powersave - CPU Microcode: 0xb000030Security Details- Intel Core i5-6400: l1tf: Mitigation of PTE Inversion; VMX: vulnerable SMT disabled + mds: Vulnerable; SMT disabled + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Vulnerable IBPB - Intel Xeon Gold 5218: SELinux + l1tf: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS - E5-2697-test: SELinux + l1tf: Mitigation of PTE Inversion + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Mitigation of Full retpoline

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsIntel Core i5-6400Intel Xeon Gold 5218E5-2697-test1.21772.43543.65314.87086.0885SE +/- 0.02546, N = 3SE +/- 0.00450, N = 3SE +/- 0.00158, N = 35.411941.569571.01888
OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsIntel Core i5-6400Intel Xeon Gold 5218E5-2697-test246810Min: 5.37 / Avg: 5.41 / Max: 5.46Min: 1.56 / Avg: 1.57 / Max: 1.58Min: 1.02 / Avg: 1.02 / Max: 1.02