namd5800xbench

AMD Ryzen 7 5800X 8-Core testing with a ASUS ROG STRIX X470-F GAMING (5809 BIOS) and NVIDIA GeForce RTX 2060 6GB on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2101169-HA-NAMD5800X52
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namd5800xbenchOpenBenchmarking.orgPhoronix Test Suite 10.2.2AMD Ryzen 7 5800X 8-Core @ 3.80GHz (8 Cores / 16 Threads)ASUS ROG STRIX X470-F GAMING (5809 BIOS)AMD Starship/Matisse32GB2 x HP SSD EX950 512GB + 1000GB Western Digital WD10EFRX-68F + 1000GB Western Digital WD10JPCX-24U + 4001GB Seagate ST4000DM004-2CV1NVIDIA GeForce RTX 2060 6GB (345/405MHz)NVIDIA TU106 HD AudioFG276Intel I211Ubuntu 20.045.10.0-051000-generic (x86_64)GNOME Shell 3.36.4X Server 1.20.9NVIDIA 450.102.04GCC 9.3.0ext42560x1440ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutionNamd5800xbench BenchmarksSystem Logs- Scaling Governor: acpi-cpufreq ondemand (Boost: Enabled) - CPU Microcode: 0xa201009- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atoms5800x0.4080.8161.2241.6322.04SE +/- 0.00363, N = 31.81335


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