os bench

VMware testing on Ubuntu 18.04 via the Phoronix Test Suite.

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ubuntu 18.04 + kernel 5.4
January 09 2021
  20 Hours
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ubuntu 18.04 + kernel 5.4

Processor: 2 x Intel Celeron J3455 (3 Cores), Motherboard: Intel 440BX (6.00 BIOS), Chipset: Intel 440BX/ZX/DX, Memory: 4096MB, Disk: 34GB Virtual disk, Graphics: VMware SVGA II, Network: VMware VMXNET3

OS: Ubuntu 18.04, Kernel: 5.4.0-54-generic (x86_64), Compiler: GCC 7.5.0, File-System: ext4, System Layer: VMware

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: CPU Microcode: 0x32
Python Notes: Python 2.7.17 + Python 3.6.9
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Vulnerable IBPB: disabled STIBP: disabled + srbds: Not affected + tsx_async_abort: Not affected

os benchOpenBenchmarking.orgPhoronix Test Suite2 x Intel Celeron J3455 (3 Cores)Intel 440BX (6.00 BIOS)Intel 440BX/ZX/DX4096MB34GB Virtual diskVMware SVGA IIVMware VMXNET3Ubuntu 18.045.4.0-54-generic (x86_64)GCC 7.5.0ext4VMwareProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemSystem LayerOs Bench BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - CPU Microcode: 0x32- Python 2.7.17 + Python 3.6.9- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Vulnerable IBPB: disabled STIBP: disabled + srbds: Not affected + tsx_async_abort: Not affected

os benchcloverleaf: Lagrangian-Eulerian Hydrodynamicscp2k: Fayalite-FIST Datanamd: ATPase Simulation - 327,506 Atomsdolfyn: Computational Fluid Dynamicsamg: fftw: Stock - 1D FFT Size 32fftw: Stock - 2D FFT Size 32fftw: Stock - 1D FFT Size 4096fftw: Stock - 2D FFT Size 4096fftw: Float + SSE - 1D FFT Size 32fftw: Float + SSE - 2D FFT Size 32fftw: Float + SSE - 1D FFT Size 4096fftw: Float + SSE - 2D FFT Size 4096pennant: sedovbigpennant: leblancbigmrbayes: Primate Phylogeny Analysisqmcpack: hmmer: Pfam Database Searchincompact3d: Cylinderlulesh: arrayfire: BLAS CPUmt-dgemm: Sustained Floating-Point Ratehimeno: Poisson Pressure Solvergromacs: Water Benchmarkubuntu 18.04 + kernel 5.429.162157.72736.9939083.385133082.143052.93188.02230.21521.43944.47710.06548.03289.41863.0511071.9911160.219376.38354.1115587.38786265.7273922.32760.0849551201.9528170.054OpenBenchmarking.org

CloverLeaf

CloverLeaf is a Lagrangian-Eulerian hydrodynamics benchmark. This test profile currently makes use of CloverLeaf's OpenMP version and benchmarked with the clover_bm8192.in input file. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCloverLeafLagrangian-Eulerian Hydrodynamicsubuntu 18.04 + kernel 5.4714212835SE +/- 0.32, N = 529.161. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp

CP2K Molecular Dynamics

CP2K is an open-source molecular dynamics software package focused on quantum chemistry and solid-state physics. This test profile currently makes use of the OpenMP implementation and using the Fayalite-FIST molecular dynamics run and measures the total time to complete. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCP2K Molecular Dynamics 6.1Fayalite-FIST Dataubuntu 18.04 + kernel 5.450010001500200025002157.73

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atomsubuntu 18.04 + kernel 5.4918273645SE +/- 0.02, N = 336.99

Dolfyn

Dolfyn is a Computational Fluid Dynamics (CFD) code of modern numerical simulation techniques. The Dolfyn test profile measures the execution time of the bundled computational fluid dynamics demos that are bundled with Dolfyn. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterDolfyn 0.527Computational Fluid Dynamicsubuntu 18.04 + kernel 5.420406080100SE +/- 0.13, N = 383.39

Algebraic Multi-Grid Benchmark

AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFigure Of Merit, More Is BetterAlgebraic Multi-Grid Benchmarkubuntu 18.04 + kernel 5.430K60K90K120K150KSE +/- 9804.97, N = 15133082.141. (CC) gcc options: -lparcsr_ls -lparcsr_mv -lseq_mv -lIJ_mv -lkrylov -lHYPRE_utilities -lm -fopenmp -pthread -lmpi

FFTW

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 32ubuntu 18.04 + kernel 5.47001400210028003500SE +/- 18.64, N = 33052.91. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 32ubuntu 18.04 + kernel 5.47001400210028003500SE +/- 9.04, N = 33188.01. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 4096ubuntu 18.04 + kernel 5.45001000150020002500SE +/- 0.82, N = 32230.21. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 4096ubuntu 18.04 + kernel 5.430060090012001500SE +/- 6.30, N = 31521.41. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 32ubuntu 18.04 + kernel 5.48001600240032004000SE +/- 17.94, N = 33944.41. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 32ubuntu 18.04 + kernel 5.417003400510068008500SE +/- 55.66, N = 37710.01. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 4096ubuntu 18.04 + kernel 5.414002800420056007000SE +/- 7.48, N = 36548.01. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 4096ubuntu 18.04 + kernel 5.47001400210028003500SE +/- 29.57, N = 93289.41. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

Pennant

Pennant is an application focused on hydrodynamics on general unstructured meshes in 2D. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: sedovbigubuntu 18.04 + kernel 5.4400800120016002000SE +/- 1.64, N = 31863.051. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: leblancbigubuntu 18.04 + kernel 5.42004006008001000SE +/- 1.09, N = 31071.991. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisubuntu 18.04 + kernel 5.42004006008001000SE +/- 1.10, N = 31160.221. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msha -maes -mrdrnd -mmpx -O3 -std=c99 -pedantic -lm

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8ubuntu 18.04 + kernel 5.480160240320400376.381. (CXX) g++ options: -fopenmp -fomit-frame-pointer -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -march=native -O3 -ffast-math -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database Searchubuntu 18.04 + kernel 5.480160240320400SE +/- 0.22, N = 3354.111. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm

Incompact3D

Incompact3d is a Fortran-MPI based, finite difference high-performance code for solving the incompressible Navier-Stokes equation and as many as you need scalar transport equations. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterIncompact3D 2020-09-17Input: Cylinderubuntu 18.04 + kernel 5.412002400360048006000SE +/- 3.60, N = 35587.391. (F9X) gfortran options: -cpp -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

LULESH

LULESH is the Livermore Unstructured Lagrangian Explicit Shock Hydrodynamics. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgz/s, More Is BetterLULESH 2.0.3ubuntu 18.04 + kernel 5.460120180240300SE +/- 1.85, N = 3265.731. (CXX) g++ options: -O3 -fopenmp -lm -pthread -lmpi_cxx -lmpi

ArrayFire

ArrayFire is an GPU and CPU numeric processing library, this test uses the built-in CPU and OpenCL ArrayFire benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS, More Is BetterArrayFire 3.7Test: BLAS CPUubuntu 18.04 + kernel 5.4510152025SE +/- 0.08, N = 322.331. (CXX) g++ options: -rdynamic

ACES DGEMM

This is a multi-threaded DGEMM benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOP/s, More Is BetterACES DGEMM 1.0Sustained Floating-Point Rateubuntu 18.04 + kernel 5.40.01910.03820.05730.07640.0955SE +/- 0.000126, N = 30.0849551. (CC) gcc options: -O3 -march=native -fopenmp

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverubuntu 18.04 + kernel 5.430060090012001500SE +/- 1.58, N = 31201.951. (CC) gcc options: -O3

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.3Water Benchmarkubuntu 18.04 + kernel 5.40.01220.02440.03660.04880.061SE +/- 0.000, N = 30.0541. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm

ubuntu 18.04 + kernel 5.4

Processor: 2 x Intel Celeron J3455 (3 Cores), Motherboard: Intel 440BX (6.00 BIOS), Chipset: Intel 440BX/ZX/DX, Memory: 4096MB, Disk: 34GB Virtual disk, Graphics: VMware SVGA II, Network: VMware VMXNET3

OS: Ubuntu 18.04, Kernel: 5.4.0-54-generic (x86_64), Compiler: GCC 7.5.0, File-System: ext4, System Layer: VMware

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: CPU Microcode: 0x32
Python Notes: Python 2.7.17 + Python 3.6.9
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Vulnerable IBPB: disabled STIBP: disabled + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 9 January 2021 08:51 by user hydrosaure.