bioinformatics08-11-2020

ARMv7 Cortex-A72 testing with a BCM2711 Raspberry Pi 4 Model B Rev 1.2 and V3D 4.2 4GB on Raspbian 10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2011160-TIM-BIOINFOR43
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bioinformatics08-11-2020
November 08 2020
  8 Hours, 1 Minute
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bioinformatics08-11-2020OpenBenchmarking.orgPhoronix Test SuiteARMv7 Cortex-A72 @ 1.50GHz (4 Cores)BCM2711 Raspberry Pi 4 Model B Rev 1.24096MB32GB SC32GV3D 4.2 4GBRaspbian 105.4.72-v7l+ (armv7l)LXDE 0.10.0X Server 1.20.4modesetting 1.20.42.1 Mesa 19.3.2GCC 8.3.0ext41920x1080ProcessorMotherboardMemoryDiskGraphicsOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionBioinformatics08-11-2020 BenchmarksSystem Logs- snd_bcm2835.enable_compat_alsa=0 snd_bcm2835.enable_hdmi=1 snd_bcm2835.enable_headphones=1 - --build=arm-linux-gnueabihf --disable-libitm --disable-libquadmath --disable-libquadmath-support --disable-sjlj-exceptions --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc=auto --enable-plugin --enable-shared --enable-threads=posix --host=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --target=arm-linux-gnueabihf --with-arch=armv6 --with-default-libstdcxx-abi=new --with-float=hard --with-fpu=vfp --with-gcc-major-version-only --with-target-system-zlib -v - Scaling Governor: cpufreq-dt ondemand

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisbioinformatics08-11-20208001600240032004000SE +/- 13.95, N = 63747.401. (CC) gcc options: -O3 -std=c99 -pedantic -lm

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8bioinformatics08-11-2020400800120016002000SE +/- 6.15, N = 31726.01. (CXX) g++ options: -fopenmp -fomit-frame-pointer -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -O3 -ffast-math

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverbioinformatics08-11-202070140210280350SE +/- 2.32, N = 20343.221. (CC) gcc options: -O3