due

AMD Ryzen 7 3800X 8-Core testing with a MSI B450M PRO-VDH MAX (MS-7A38) v8.0 (B.70 BIOS) and Sapphire AMD Radeon RX 550 640SP / 560/560X 4GB on ManjaroLinux 20.2 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2011140-NE-DUE29319350
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Bioinformatics 5 Tests
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Scientific Computing 5 Tests
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November 14 2020
  19 Minutes
AMD Ryzen 7 3800X 8-Core
November 14 2020
  22 Minutes
ADATA SX8200PNP - AMD Ryzen 7 3800X 8-Core
November 14 2020
  12 Minutes
ADATA SX8200PNP
November 14 2020
 
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Processor: AMD Ryzen 7 3800X 8-Core @ 3.90GHz (8 Cores / 16 Threads), Motherboard: MSI B450M PRO-VDH MAX (MS-7A38) v8.0 (B.70 BIOS), Chipset: AMD Starship/Matisse, Memory: 16GB, Disk: 512GB ADATA SX8200PNP + 500GB Samsung SSD 850 + 3001GB Western Digital WD30EZRX-00D + 2000GB SAMSUNG HD204UI, Graphics: Sapphire AMD Radeon RX 550 640SP / 560/560X 4GB (1071/1500MHz), Audio: AMD Baffin HDMI/DP, Monitor: U28E570 + ASUS VH232, Network: Realtek RTL8111/8168/8411

OS: ManjaroLinux 20.2, Kernel: 5.9.8-AMD-znver2 (x86_64), Desktop: GNOME Shell 3.38.1, Display Server: X Server + Wayland, OpenGL: 4.6 Mesa 20.2.2 (LLVM 11.0.0), Compiler: GCC 10.2.0 + TCC 0.9.27 + Clang 11.0.0Target:, File-System: ext4, Screen Resolution: 4480x1440

Compiler Notes: --disable-libssp --disable-libstdcxx-pch --disable-libunwind-exceptions --disable-werror --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-install-libiberty --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++,d --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-isl --with-linker-hash-style=gnu
Disk Notes: NONE / noatime,rw
Processor Notes: Scaling Governor: acpi-cpufreq schedutil - CPU Microcode: 0x8701021
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

AMD Ryzen 7 3800X 8-Core

Compiler Notes: --disable-libssp --disable-libstdcxx-pch --disable-libunwind-exceptions --disable-werror --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-install-libiberty --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++,d --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-isl --with-linker-hash-style=gnu
Processor Notes: Scaling Governor: acpi-cpufreq schedutil - CPU Microcode: 0x8701021
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

ADATA SX8200PNP - AMD Ryzen 7 3800X 8-Core

Processor Notes: Scaling Governor: acpi-cpufreq schedutil - CPU Microcode: 0x8701021
Python Notes: Python 3.8.6
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

ADATA SX8200PNP

Changed Disk to 512GB ADATA SX8200PNP + 500GB Samsung SSD 850 + 2000GB SAMSUNG HD204UI + 3001GB Western Digital WD30EZRX-00D.

dueOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 7 3800X 8-Core @ 3.90GHz (8 Cores / 16 Threads)MSI B450M PRO-VDH MAX (MS-7A38) v8.0 (B.70 BIOS)AMD Starship/Matisse16GB512GB ADATA SX8200PNP + 500GB Samsung SSD 850 + 3001GB Western Digital WD30EZRX-00D + 2000GB SAMSUNG HD204UI512GB ADATA SX8200PNP + 500GB Samsung SSD 850 + 2000GB SAMSUNG HD204UI + 3001GB Western Digital WD30EZRX-00DSapphire AMD Radeon RX 550 640SP / 560/560X 4GB (1071/1500MHz)AMD Baffin HDMI/DPU28E570 + ASUS VH232Realtek RTL8111/8168/8411ManjaroLinux 20.25.9.8-AMD-znver2 (x86_64)GNOME Shell 3.38.1X Server + Wayland4.6 Mesa 20.2.2 (LLVM 11.0.0)GCC 10.2.0 + TCC 0.9.27 + Clang 11.0.0Target:ext44480x1440ProcessorMotherboardChipsetMemoryDisksGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionDue BenchmarksSystem Logs- due, AMD Ryzen 7 3800X 8-Core: --disable-libssp --disable-libstdcxx-pch --disable-libunwind-exceptions --disable-werror --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-install-libiberty --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++,d --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-isl --with-linker-hash-style=gnu - due: NONE / noatime,rw- Scaling Governor: acpi-cpufreq schedutil - CPU Microcode: 0x8701021- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected - ADATA SX8200PNP - AMD Ryzen 7 3800X 8-Core, ADATA SX8200PNP: Python 3.8.6

duenumpy: himeno: Poisson Pressure Solvermafft: Multiple Sequence Alignment - LSU RNAhmmer: Pfam Database Searchqmcpack: mrbayes: Primate Phylogeny Analysisperf-bench: Syscall Basicperf-bench: Futex Lock-Piperf-bench: Sched Pipeperf-bench: Memset 1MBperf-bench: Memcpy 1MBperf-bench: Futex Hashperf-bench: Epoll Waitosbench: Memory Allocationsosbench: Create Processesosbench: Launch Programsosbench: Create Threadsosbench: Create Filespgbench: 1 - 1 - Read Write - Average Latencypgbench: 1 - 1 - Read Writepgbench: 1 - 1 - Read Only - Average Latencypgbench: 1 - 1 - Read Onlyapache: Static Web Page Servingpostmark: Disk Transaction PerformancedueAMD Ryzen 7 3800X 8-CoreADATA SX8200PNP - AMD Ryzen 7 3800X 8-CoreADATA SX8200PNP10241511101016691577.50712712.08682421027848859177.89977424.29008536.4060409.52005411.9731080.52619000.0283593937108.6877334846.62220412.46695.288617.0268.889376.56OpenBenchmarking.org

Numpy Benchmark

This is a test to obtain the general Numpy performance. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgScore, More Is BetterNumpy BenchmarkADATA SX8200PNP - AMD Ryzen 7 3800X 8-Core80160240320400SE +/- 4.67, N = 3376.56

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolverAMD Ryzen 7 3800X 8-Core10002000300040005000SE +/- 36.03, N = 34846.62

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAAMD Ryzen 7 3800X 8-Core3691215SE +/- 0.07, N = 312.47

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database SearchAMD Ryzen 7 3800X 8-Core20406080100SE +/- 0.16, N = 395.29

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8AMD Ryzen 7 3800X 8-Core130260390520650617.02

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny AnalysisAMD Ryzen 7 3800X 8-Core1530456075SE +/- 0.10, N = 368.89

perf-bench

This test profile is used for running Linux perf-bench, the benchmark support within the Linux kernel's perf tool. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgops/sec, More Is Betterperf-benchBenchmark: Syscall Basicdue2M4M6M8M10MSE +/- 17156.55, N = 310241511

OpenBenchmarking.orgops/sec, More Is Betterperf-benchBenchmark: Futex Lock-Pidue2004006008001000SE +/- 1.53, N = 31010

OpenBenchmarking.orgops/sec, More Is Betterperf-benchBenchmark: Sched Pipedue40K80K120K160K200KSE +/- 1253.71, N = 3166915

OpenBenchmarking.orgGB/sec, More Is Betterperf-benchBenchmark: Memset 1MBdue20406080100SE +/- 0.85, N = 1577.51

OpenBenchmarking.orgGB/sec, More Is Betterperf-benchBenchmark: Memcpy 1MBdue3691215SE +/- 0.17, N = 312.09

OpenBenchmarking.orgops/sec, More Is Betterperf-benchBenchmark: Futex Hashdue500K1000K1500K2000K2500KSE +/- 14558.54, N = 32102784

OpenBenchmarking.orgops/sec, More Is Betterperf-benchBenchmark: Epoll Waitdue20K40K60K80K100KSE +/- 213.66, N = 388591

OSBench

OSBench is a collection of micro-benchmarks for measuring operating system primitives like time to create threads/processes, launching programs, creating files, and memory allocation. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Event, Fewer Is BetterOSBenchTest: Memory Allocationsdue20406080100SE +/- 0.63, N = 377.90

OpenBenchmarking.orgus Per Event, Fewer Is BetterOSBenchTest: Create Processesdue612182430SE +/- 0.39, N = 324.29

OpenBenchmarking.orgus Per Event, Fewer Is BetterOSBenchTest: Launch Programsdue816243240SE +/- 0.44, N = 536.41

OpenBenchmarking.orgus Per Event, Fewer Is BetterOSBenchTest: Create Threadsdue3691215SE +/- 0.064034, N = 39.520054

OpenBenchmarking.orgus Per Event, Fewer Is BetterOSBenchTest: Create Filesdue3691215SE +/- 0.08, N = 311.97

PostgreSQL pgbench

This is a benchmark of PostgreSQL using pgbench for facilitating the database benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgms, Fewer Is BetterPostgreSQL pgbench 13.0Scaling Factor: 1 - Clients: 1 - Mode: Read Write - Average Latencydue0.11840.23680.35520.47360.592SE +/- 0.002, N = 30.5261. (CC) gcc options: -fno-strict-aliasing -fwrapv -O2 -lpgcommon -lpgport -lpq -lpthread -lrt -ldl -lm

OpenBenchmarking.orgTPS, More Is BetterPostgreSQL pgbench 13.0Scaling Factor: 1 - Clients: 1 - Mode: Read Writedue400800120016002000SE +/- 7.51, N = 319001. (CC) gcc options: -fno-strict-aliasing -fwrapv -O2 -lpgcommon -lpgport -lpq -lpthread -lrt -ldl -lm

OpenBenchmarking.orgms, Fewer Is BetterPostgreSQL pgbench 13.0Scaling Factor: 1 - Clients: 1 - Mode: Read Only - Average Latencydue0.00630.01260.01890.02520.0315SE +/- 0.001, N = 30.0281. (CC) gcc options: -fno-strict-aliasing -fwrapv -O2 -lpgcommon -lpgport -lpq -lpthread -lrt -ldl -lm

OpenBenchmarking.orgTPS, More Is BetterPostgreSQL pgbench 13.0Scaling Factor: 1 - Clients: 1 - Mode: Read Onlydue8K16K24K32K40KSE +/- 532.44, N = 3359391. (CC) gcc options: -fno-strict-aliasing -fwrapv -O2 -lpgcommon -lpgport -lpq -lpthread -lrt -ldl -lm

Apache Benchmark

This is a test of ab, which is the Apache benchmark program. This test profile measures how many requests per second a given system can sustain when carrying out 1,000,000 requests with 100 requests being carried out concurrently. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgRequests Per Second, More Is BetterApache Benchmark 2.4.29Static Web Page Servingdue8K16K24K32K40KSE +/- 355.23, N = 337108.681. (CC) gcc options: -shared -fPIC -O2 -pthread

PostMark

This is a test of NetApp's PostMark benchmark designed to simulate small-file testing similar to the tasks endured by web and mail servers. This test profile will set PostMark to perform 25,000 transactions with 500 files simultaneously with the file sizes ranging between 5 and 512 kilobytes. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTPS, More Is BetterPostMark 1.51Disk Transaction Performancedue17003400510068008500SE +/- 79.00, N = 377331. (CC) gcc options: -O3

due

Processor: AMD Ryzen 7 3800X 8-Core @ 3.90GHz (8 Cores / 16 Threads), Motherboard: MSI B450M PRO-VDH MAX (MS-7A38) v8.0 (B.70 BIOS), Chipset: AMD Starship/Matisse, Memory: 16GB, Disk: 512GB ADATA SX8200PNP + 500GB Samsung SSD 850 + 3001GB Western Digital WD30EZRX-00D + 2000GB SAMSUNG HD204UI, Graphics: Sapphire AMD Radeon RX 550 640SP / 560/560X 4GB (1071/1500MHz), Audio: AMD Baffin HDMI/DP, Monitor: U28E570 + ASUS VH232, Network: Realtek RTL8111/8168/8411

OS: ManjaroLinux 20.2, Kernel: 5.9.8-AMD-znver2 (x86_64), Desktop: GNOME Shell 3.38.1, Display Server: X Server + Wayland, OpenGL: 4.6 Mesa 20.2.2 (LLVM 11.0.0), Compiler: GCC 10.2.0 + TCC 0.9.27 + Clang 11.0.0Target:, File-System: ext4, Screen Resolution: 4480x1440

Compiler Notes: --disable-libssp --disable-libstdcxx-pch --disable-libunwind-exceptions --disable-werror --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-install-libiberty --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++,d --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-isl --with-linker-hash-style=gnu
Disk Notes: NONE / noatime,rw
Processor Notes: Scaling Governor: acpi-cpufreq schedutil - CPU Microcode: 0x8701021
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 14 November 2020 00:35 by user fiognome.

AMD Ryzen 7 3800X 8-Core

Compiler Notes: --disable-libssp --disable-libstdcxx-pch --disable-libunwind-exceptions --disable-werror --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-install-libiberty --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++,d --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-isl --with-linker-hash-style=gnu
Processor Notes: Scaling Governor: acpi-cpufreq schedutil - CPU Microcode: 0x8701021
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 14 November 2020 15:04 by user fiognome.

ADATA SX8200PNP - AMD Ryzen 7 3800X 8-Core

Processor Notes: Scaling Governor: acpi-cpufreq schedutil - CPU Microcode: 0x8701021
Python Notes: Python 3.8.6
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 14 November 2020 22:43 by user fiognome.

ADATA SX8200PNP

Processor: AMD Ryzen 7 3800X 8-Core @ 3.90GHz (8 Cores / 16 Threads), Motherboard: MSI B450M PRO-VDH MAX (MS-7A38) v8.0 (B.70 BIOS), Chipset: AMD Starship/Matisse, Memory: 16GB, Disk: 512GB ADATA SX8200PNP + 500GB Samsung SSD 850 + 2000GB SAMSUNG HD204UI + 3001GB Western Digital WD30EZRX-00D, Graphics: Sapphire AMD Radeon RX 550 640SP / 560/560X 4GB (1071/1500MHz), Audio: AMD Baffin HDMI/DP, Monitor: U28E570 + ASUS VH232, Network: Realtek RTL8111/8168/8411

OS: ManjaroLinux 20.2, Kernel: 5.9.8-AMD-znver2 (x86_64), Desktop: GNOME Shell 3.38.1, Display Server: X Server + Wayland, OpenGL: 4.6 Mesa 20.2.2 (LLVM 11.0.0), Compiler: GCC 10.2.0 + TCC 0.9.27 + Clang 11.0.0Target:, File-System: ext4, Screen Resolution: 4480x1440

Processor Notes: Scaling Governor: acpi-cpufreq schedutil - CPU Microcode: 0x8701021
Python Notes: Python 3.8.6
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 14 November 2020 23:02 by user fiognome.