namd-1

AMD EPYC 7F72 24-Core testing with a AIC AURIGA v01 (Aurw_1.00.2 BIOS) and ASPEED on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2010165-FI-NAMD1710688
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
AMD EPYC 7F72 24-Core
October 16 2020
  3 Minutes


namd-1OpenBenchmarking.orgPhoronix Test SuiteAMD EPYC 7F72 24-Core @ 3.20GHz (24 Cores / 48 Threads)AIC AURIGA v01 (Aurw_1.00.2 BIOS)AMD Starship/Matisse252GB18 x 1024GB Samsung SSD 970 PRO 1TB + 2 x 960GB ATP NVMe M.2 2280 SSDASPEEDAMD Starship/Matisse2 x Broadcom BCM57416 NetXtreme-E Dual-Media 10G RDMAUbuntu 20.045.4.0-51-generic (x86_64)GCC 9.3.0ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelCompilerFile-SystemScreen ResolutionNamd-1 BenchmarksSystem Logs- Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301034- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsAMD EPYC 7F72 24-Core0.19670.39340.59010.78680.9835SE +/- 0.00176, N = 30.87404