LAMMPS + Incompact3D Regression

Intel Core i9-10980XE testing with a ASRock X299 Steel Legend (P1.30 BIOS) and NVIDIA NV132 11GB on Ubuntu 20.10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2009211-FI-LAMMPSINC48
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Linux 5.8.0
September 21 2020
  46 Minutes
Linux 5.9-rc6
September 21 2020
  2 Hours, 30 Minutes
PLU 0
September 21 2020
  2 Hours, 27 Minutes
PLU 1000
September 21 2020
  1 Hour
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  1 Hour, 41 Minutes

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Linux 5.8.0

Processor: Intel Core i9-10980XE @ 4.80GHz (18 Cores / 36 Threads), Motherboard: ASRock X299 Steel Legend (P1.30 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 32GB, Disk: Samsung SSD 970 PRO 512GB, Graphics: NVIDIA NV132 11GB, Audio: Realtek ALC1220, Monitor: ASUS MG28U, Network: Intel I219-V + Intel I211

OS: Ubuntu 20.10, Kernel: 5.8.0-050800-generic (x86_64), Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.8, Display Driver: modesetting 1.20.8, OpenGL: 4.3 Mesa 20.1.5, Compiler: GCC 10.2.0, File-System: ext4, Screen Resolution: 3840x2160

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_cpufreq performance - CPU Microcode: 0x5002f01
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

Linux 5.9-rc6

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5002f01
Security Notes: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

PLU 0

PLU 1000

OS: Ubuntu 20.10, Kernel: 5.9.0-050900rc5daily20200920-generic (x86_64) 20200919, Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.8, Display Driver: modesetting 1.20.8, OpenGL: 4.3 Mesa 20.1.5, Compiler: GCC 10.2.0, File-System: ext4, Screen Resolution: 3840x2160

LAMMPS + Incompact3D RegressionOpenBenchmarking.orgPhoronix Test SuiteIntel Core i9-10980XE @ 4.80GHz (18 Cores / 36 Threads)ASRock X299 Steel Legend (P1.30 BIOS)Intel Sky Lake-E DMI3 Registers32GBSamsung SSD 970 PRO 512GBNVIDIA NV132 11GBRealtek ALC1220ASUS MG28UIntel I219-V + Intel I211Ubuntu 20.105.8.0-050800-generic (x86_64)5.9.0-050900rc5daily20200920-generic (x86_64) 20200919GNOME Shell 3.36.4X Server 1.20.8modesetting 1.20.84.3 Mesa 20.1.5GCC 10.2.0ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelsDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionLAMMPS + Incompact3D Regression BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Linux 5.8.0: Scaling Governor: intel_cpufreq performance - CPU Microcode: 0x5002f01 - Linux 5.9-rc6: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5002f01 - PLU 0: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5002f01- PLU 1000: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5002f01 - Linux 5.8.0: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled - Linux 5.9-rc6: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled - PLU 0: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled - PLU 1000: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

Incompact3D

Incompact3d is a Fortran-MPI based, finite difference high-performance code for solving the incompressible Navier-Stokes equation and as many as you need scalar transport equations. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterIncompact3D 2020-09-17Input: CylinderLinux 5.8.0Linux 5.9-rc6PLU 0PLU 100070140210280350SE +/- 1.90, N = 3SE +/- 4.02, N = 3SE +/- 1.74, N = 3SE +/- 0.79, N = 3227.14328.70336.86328.051. (F9X) gfortran options: -cpp -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent -levent_pthreads -lutil -lm -lrt -lz
OpenBenchmarking.orgSeconds, Fewer Is BetterIncompact3D 2020-09-17Input: CylinderLinux 5.8.0Linux 5.9-rc6PLU 0PLU 100060120180240300Min: 223.5 / Avg: 227.14 / Max: 229.91Min: 322.22 / Avg: 328.7 / Max: 336.05Min: 334.36 / Avg: 336.86 / Max: 340.21Min: 327.06 / Avg: 328.05 / Max: 329.611. (F9X) gfortran options: -cpp -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent -levent_pthreads -lutil -lm -lrt -lz

LAMMPS Molecular Dynamics Simulator

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 24Aug2020Model: 20k AtomsLinux 5.8.0Linux 5.9-rc6PLU 0PLU 10003691215SE +/- 0.026, N = 3SE +/- 0.145, N = 9SE +/- 0.124, N = 9SE +/- 0.112, N = 312.5589.79910.05510.1141. (CXX) g++ options: -O3 -pthread -lm
OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 24Aug2020Model: 20k AtomsLinux 5.8.0Linux 5.9-rc6PLU 0PLU 100048121620Min: 12.52 / Avg: 12.56 / Max: 12.6Min: 9.08 / Avg: 9.8 / Max: 10.42Min: 9.31 / Avg: 10.06 / Max: 10.5Min: 9.98 / Avg: 10.11 / Max: 10.341. (CXX) g++ options: -O3 -pthread -lm

Linux 5.8.0

Processor: Intel Core i9-10980XE @ 4.80GHz (18 Cores / 36 Threads), Motherboard: ASRock X299 Steel Legend (P1.30 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 32GB, Disk: Samsung SSD 970 PRO 512GB, Graphics: NVIDIA NV132 11GB, Audio: Realtek ALC1220, Monitor: ASUS MG28U, Network: Intel I219-V + Intel I211

OS: Ubuntu 20.10, Kernel: 5.8.0-050800-generic (x86_64), Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.8, Display Driver: modesetting 1.20.8, OpenGL: 4.3 Mesa 20.1.5, Compiler: GCC 10.2.0, File-System: ext4, Screen Resolution: 3840x2160

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_cpufreq performance - CPU Microcode: 0x5002f01
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

Testing initiated at 21 September 2020 07:11 by user phoronix.

Linux 5.9-rc6

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5002f01
Security Notes: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

Testing initiated at 21 September 2020 08:14 by user phoronix.

PLU 0

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5002f01
Security Notes: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

Testing initiated at 21 September 2020 10:49 by user phoronix.

PLU 1000

Processor: Intel Core i9-10980XE @ 4.80GHz (18 Cores / 36 Threads), Motherboard: ASRock X299 Steel Legend (P1.30 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 32GB, Disk: Samsung SSD 970 PRO 512GB, Graphics: NVIDIA NV132 11GB, Audio: Realtek ALC1220, Monitor: ASUS MG28U, Network: Intel I219-V + Intel I211

OS: Ubuntu 20.10, Kernel: 5.9.0-050900rc5daily20200920-generic (x86_64) 20200919, Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.8, Display Driver: modesetting 1.20.8, OpenGL: 4.3 Mesa 20.1.5, Compiler: GCC 10.2.0, File-System: ext4, Screen Resolution: 3840x2160

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Fb4d6e/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5002f01
Security Notes: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

Testing initiated at 21 September 2020 13:32 by user phoronix.