NAMD_results

Docker testing on Ubuntu 20.04 LTS via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2009155-NE-NAMDRESUL28
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
NAMD_Epsilon
September 15 2020
  2 Minutes


NAMD_resultsOpenBenchmarking.orgPhoronix Test Suite2 x AMD EPYC 7H12 64-Core (128 Cores / 256 Threads)Dell 0GK70M (1.4.8 BIOS)2012GB480GB PERC H745 Frnt + 7198GB PERC H745 FrntmgadrmfbUbuntu 20.04 LTS3.10.0-1127.el7.x86_64 (x86_64)overlayfs1024x768DockerProcessorMotherboardMemoryDiskGraphicsOSKernelFile-SystemScreen ResolutionSystem LayerNAMD_results PerformanceSystem Logs- CPU Microcode: 0x8301038- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of Load fences usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full retpoline IBPB + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsNAMD_Epsilon0.05740.11480.17220.22960.287SE +/- 0.00215, N = 30.25531