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01
September 03 2020
  9 Minutes


01OpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen Threadripper 3970X 32-Core @ 3.70GHz (32 Cores / 64 Threads)Gigabyte TRX40 AORUS PRO WIFI (F4c BIOS)AMD Starship/Matisse252GB2 x 1000GB Samsung SSD 970 EVO 1TB + 500GB Samsung SSD 860MSI NVIDIA GeForce GTX 1050 Ti 4GB (1290/3504MHz)NVIDIA GP107GL HD Audio24V2W1G5Intel I211 + Intel Wi-Fi 6 AX200Ubuntu 20.045.4.0-45-generic (x86_64)GNOME Shell 3.36.4X Server 1.20.8NVIDIA 440.95.01GCC 9.3.0ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverCompilerFile-SystemScreen Resolution01 BenchmarksSystem Logs- Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atoms010.15070.30140.45210.60280.7535SE +/- 0.02405, N = 150.66970