NAMD high end

AMD Ryzen Threadripper 3970X 32-Core testing with a ASUS ROG ZENITH II EXTREME (0702 BIOS) and NVIDIA TITAN RTX 24GB on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2009013-PTS-NAMDHIGH15
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
AMD Ryzen Threadripper 3970X 32-Core
September 01 2020
  4 Minutes
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AMD Ryzen Threadripper 3970X 32-Core

Processor: AMD Ryzen Threadripper 3970X 32-Core @ 3.70GHz (32 Cores / 64 Threads), Motherboard: ASUS ROG ZENITH II EXTREME (0702 BIOS), Chipset: AMD Starship/Matisse, Memory: 64GB, Disk: 1000GB Corsair Force MP600, Graphics: NVIDIA TITAN RTX 24GB (1350/7000MHz), Audio: NVIDIA TU102 HD Audio, Monitor: ASUS MG28U, Network: Aquantia AQC107 NBase-T/IEEE + Intel I211 + Intel Wi-Fi 6 AX200

OS: Ubuntu 20.04, Kernel: 5.4.0-42-generic (x86_64), Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.8, Display Driver: NVIDIA 450.36.06, OpenGL: 4.6.0, OpenCL: OpenCL 1.2 CUDA 11.0.185, Compiler: GCC 9.3.0 + CUDA 11.0, File-System: ext4, Screen Resolution: 3840x2160

Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD high endOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen Threadripper 3970X 32-Core @ 3.70GHz (32 Cores / 64 Threads)ASUS ROG ZENITH II EXTREME (0702 BIOS)AMD Starship/Matisse64GB1000GB Corsair Force MP600NVIDIA TITAN RTX 24GB (1350/7000MHz)NVIDIA TU102 HD AudioASUS MG28UAquantia AQC107 NBase-T/IEEE + Intel I211 + Intel Wi-Fi 6 AX200Ubuntu 20.045.4.0-42-generic (x86_64)GNOME Shell 3.36.4X Server 1.20.8NVIDIA 450.36.064.6.0OpenCL 1.2 CUDA 11.0.185GCC 9.3.0 + CUDA 11.0ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLOpenCLCompilerFile-SystemScreen ResolutionNAMD High End BenchmarksSystem Logs- Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsAMD Ryzen Threadripper 3970X 32-Core0.13540.27080.40620.54160.677SE +/- 0.00862, N = 30.60171

NAMD CUDA

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. This version of the NAMD test profile uses CUDA GPU acceleration. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD CUDA 2.14ATPase Simulation - 327,506 AtomsAMD Ryzen Threadripper 3970X 32-Core0.01930.03860.05790.07720.0965SE +/- 0.00077, N = 30.08576

AMD Ryzen Threadripper 3970X 32-Core

Processor: AMD Ryzen Threadripper 3970X 32-Core @ 3.70GHz (32 Cores / 64 Threads), Motherboard: ASUS ROG ZENITH II EXTREME (0702 BIOS), Chipset: AMD Starship/Matisse, Memory: 64GB, Disk: 1000GB Corsair Force MP600, Graphics: NVIDIA TITAN RTX 24GB (1350/7000MHz), Audio: NVIDIA TU102 HD Audio, Monitor: ASUS MG28U, Network: Aquantia AQC107 NBase-T/IEEE + Intel I211 + Intel Wi-Fi 6 AX200

OS: Ubuntu 20.04, Kernel: 5.4.0-42-generic (x86_64), Desktop: GNOME Shell 3.36.4, Display Server: X Server 1.20.8, Display Driver: NVIDIA 450.36.06, OpenGL: 4.6.0, OpenCL: OpenCL 1.2 CUDA 11.0.185, Compiler: GCC 9.3.0 + CUDA 11.0, File-System: ext4, Screen Resolution: 3840x2160

Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 1 September 2020 14:52 by user pts.