NAMD 3960X

AMD Ryzen Threadripper 3960X 24-Core testing with a MSI Creator TRX40 (MS-7C59) v1.0 (1.12N1 BIOS) and Sapphire AMD Radeon RX 5500/5500M / Pro 5500M 4GB on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2009012-FI-NAMD3960X27
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
AMD Ryzen Threadripper 3960X 24-Core
September 01 2020
  3 Minutes


NAMD 3960XOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen Threadripper 3960X 24-Core @ 3.80GHz (24 Cores / 48 Threads)MSI Creator TRX40 (MS-7C59) v1.0 (1.12N1 BIOS)AMD Starship/Matisse32GB1000GB Sabrent Rocket 4.0 1TBSapphire AMD Radeon RX 5500/5500M / Pro 5500M 4GB (1900/875MHz)AMD Navi 10 HDMI AudioASUS MG28UAquantia AQC107 NBase-T/IEEE + Intel I211 + Intel Wi-Fi 6 AX200Ubuntu 20.045.4.0-42-generic (x86_64)GNOME Shell 3.36.4X Server 1.20.8modesetting 1.20.84.6 Mesa 20.0.8 (LLVM 10.0.0)GCC 9.3.0ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionNAMD 3960X BenchmarksSystem Logs- Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsAMD Ryzen Threadripper 3960X 24-Core0.17080.34160.51240.68320.854SE +/- 0.00268, N = 30.75899