Fedora32-wks1_scientific_12aug2020

VMware testing on Fedora 32 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2008137-AS-FEDORA32W16
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
2 x AMD Ryzen Threadripper 3960X 24-Core
August 12 2020
  2 Hours, 4 Minutes
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Fedora32-wks1_scientific_12aug2020OpenBenchmarking.orgPhoronix Test Suite2 x AMD Ryzen Threadripper 3960X 24-Core (4 Cores)Intel 440BX (6.00 BIOS)Intel 440BX/ZX/DX4096MB54GB VMware Virtual Sllvmpipe 4GBEnsoniq ES1371/ES1373Intel 82545EM + 4 x AMD 79c970Fedora 325.6.6-300.fc32.x86_64 (x86_64)GNOME Shell 3.36.1X Server + Wayland3.3 Mesa 20.0.4 (LLVM 10.0.0 128 bits)GCC 10.0.1 20200328 + Clang 10.0.0ext4800x600VMwareProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionSystem LayerFedora32-wks1_scientific_12aug2020 BenchmarksSystem Logs- --build=x86_64-redhat-linux --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-cet --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,d,lto --enable-multilib --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-gcc-major-version-only --with-isl --with-linker-hash-style=gnu --with-tune=generic --without-cuda-driver - SELinux + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + tsx_async_abort: Not affected

Fedora32-wks1_scientific_12aug2020hpcc: G-HPLcloverleaf: Lagrangian-Eulerian Hydrodynamicscp2k: Fayalite-FIST Datanamd: ATPase Simulation - 327,506 Atomsfftw: Stock - 1D FFT Size 32fftw: Stock - 2D FFT Size 32fftw: Stock - 1D FFT Size 4096fftw: Stock - 2D FFT Size 4096fftw: Float + SSE - 1D FFT Size 32fftw: Float + SSE - 2D FFT Size 32fftw: Float + SSE - 1D FFT Size 4096fftw: Float + SSE - 2D FFT Size 4096hmmer: Pfam Database Searcharrayfire: BLAS CPUmt-dgemm: Sustained Floating-Point Ratehimeno: Poisson Pressure Solverrbenchmark: octave-benchmark: 2 x AMD Ryzen Threadripper 3960X 24-Core11.256383.44585.945.171129919.2310009.308243.176227.20141824281251486186229.08122.450.804643.230.22577.15OpenBenchmarking.org

HPC Challenge

HPC Challenge (HPCC) is a cluster-focused benchmark consisting of the HPL Linpack TPP benchmark, DGEMM, STREAM, PTRANS, RandomAccess, FFT, and communication bandwidth and latency. This HPC Challenge test profile attempts to ship with standard yet versatile configuration/input files though they can be modified. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS, More Is BetterHPC Challenge 1.5.0Test / Class: G-HPL2 x AMD Ryzen Threadripper 3960X 24-Core3691215SE +/- 0.17, N = 411.261. (CC) gcc options: -lblas -lm -pthread -lmpi -fomit-frame-pointer -funroll-loops2. ATLAS + Open MPI 4.0.4

CloverLeaf

CloverLeaf is a Lagrangian-Eulerian hydrodynamics benchmark. This test profile currently makes use of CloverLeaf's OpenMP version and benchmarked with the clover_bm8192.in input file. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCloverLeafLagrangian-Eulerian Hydrodynamics2 x AMD Ryzen Threadripper 3960X 24-Core0.7741.5482.3223.0963.87SE +/- 0.01, N = 33.441. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp

CP2K Molecular Dynamics

CP2K is an open-source molecular dynamics software package focused on quantum chemistry and solid-state physics. This test profile currently makes use of the OpenMP implementation and using the Fayalite-FIST molecular dynamics run and measures the total time to complete. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCP2K Molecular Dynamics 6.1Fayalite-FIST Data2 x AMD Ryzen Threadripper 3960X 24-Core130260390520650585.94

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 Atoms2 x AMD Ryzen Threadripper 3960X 24-Core1.16352.3273.49054.6545.8175SE +/- 0.05698, N = 35.17112

FFTW

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 322 x AMD Ryzen Threadripper 3960X 24-Core2K4K6K8K10KSE +/- 30.46, N = 39919.231. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 322 x AMD Ryzen Threadripper 3960X 24-Core2K4K6K8K10KSE +/- 22.86, N = 310009.301. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 40962 x AMD Ryzen Threadripper 3960X 24-Core2K4K6K8K10KSE +/- 6.36, N = 38243.171. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 40962 x AMD Ryzen Threadripper 3960X 24-Core13002600390052006500SE +/- 6.07, N = 36227.201. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 322 x AMD Ryzen Threadripper 3960X 24-Core3K6K9K12K15KSE +/- 53.93, N = 3141821. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 322 x AMD Ryzen Threadripper 3960X 24-Core9K18K27K36K45KSE +/- 83.01, N = 3428121. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 40962 x AMD Ryzen Threadripper 3960X 24-Core11K22K33K44K55KSE +/- 536.99, N = 3514861. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 40962 x AMD Ryzen Threadripper 3960X 24-Core4K8K12K16K20KSE +/- 50.78, N = 3186221. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search2 x AMD Ryzen Threadripper 3960X 24-Core3691215SE +/- 0.09, N = 89.081. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

ArrayFire

ArrayFire is an GPU and CPU numeric processing library, this test uses the built-in CPU and OpenCL ArrayFire benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS, More Is BetterArrayFire 3.7Test: BLAS CPU2 x AMD Ryzen Threadripper 3960X 24-Core306090120150SE +/- 0.14, N = 3122.451. (CXX) g++ options: -rdynamic

ACES DGEMM

This is a multi-threaded DGEMM benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOP/s, More Is BetterACES DGEMM 1.0Sustained Floating-Point Rate2 x AMD Ryzen Threadripper 3960X 24-Core0.180.360.540.720.9SE +/- 0.00, N = 30.801. (CC) gcc options: -O3 -march=native -fopenmp

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solver2 x AMD Ryzen Threadripper 3960X 24-Core10002000300040005000SE +/- 59.10, N = 34643.231. (CC) gcc options: -O3 -mavx2

R Benchmark

This test is a quick-running survey of general R performance Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterR Benchmark2 x AMD Ryzen Threadripper 3960X 24-Core0.05080.10160.15240.20320.254SE +/- 0.0009, N = 30.22571. R scripting front-end version 4.0.2 (2020-06-22)

GNU Octave Benchmark

This test profile measures how long it takes to complete several reference GNU Octave files via octave-benchmark. GNU Octave is used for numerical computations and is an open-source alternative to MATLAB. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterGNU Octave Benchmark 5.2.02 x AMD Ryzen Threadripper 3960X 24-Core246810SE +/- 0.07, N = 57.15