lenovo-i5-9400-ssd-ubuntu-scicomp

Intel Core i5-9400F testing with a LENOVO 36EB (O3QKT3CA BIOS) and NVIDIA GeForce GTX 1650 4GB on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2005307-JHAM-LENOVOI95
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lenovo-i5-9400-ssd-ubuntu-scicomp
May 29 2020
  4 Hours, 17 Minutes
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lenovo-i5-9400-ssd-ubuntu-scicomp

Processor: Intel Core i5-9400F @ 4.10GHz (6 Cores), Motherboard: LENOVO 36EB (O3QKT3CA BIOS), Chipset: Intel Cannon Lake PCH, Memory: 2 x 16384 MB DDR4-2400MT/s 16GF2X08QFHH36-135-K, Disk: 1000GB PNY CS3030 1TB SSD + 1000GB Western Digital WD10EZEX-08W, Graphics: NVIDIA GeForce GTX 1650 4GB (1485/4001MHz), Audio: Realtek ALC233, Monitor: ASUS PA238, Network: Intel I219-V

OS: Ubuntu 20.04, Kernel: 5.4.0-33-generic (x86_64), Desktop: GNOME Shell 3.36.2, Display Server: X Server 1.20.8, Display Driver: NVIDIA 440.64, OpenGL: 4.6.0, OpenCL: OpenCL 1.2 CUDA 10.2.141, Compiler: GCC 9.3.0, File-System: ext4, Screen Resolution: 1920x1080

Environment Notes: CXXFLAGS="-O3 -pipe -march=native -flto" CFLAGS="-O3 -pipe -march=native -flto" FFLAGS="-O3 -pipe -march=native -flto"
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate performance - CPU Microcode: 0xcc
OpenCL Notes: GPU Compute Cores: 896
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + tsx_async_abort: Not affected

lenovo-i5-9400-ssd-ubuntu-scicompOpenBenchmarking.orgPhoronix Test SuiteIntel Core i5-9400F @ 4.10GHz (6 Cores)LENOVO 36EB (O3QKT3CA BIOS)Intel Cannon Lake PCH2 x 16384 MB DDR4-2400MT/s 16GF2X08QFHH36-135-K1000GB PNY CS3030 1TB SSD + 1000GB Western Digital WD10EZEX-08WNVIDIA GeForce GTX 1650 4GB (1485/4001MHz)Realtek ALC233ASUS PA238Intel I219-VUbuntu 20.045.4.0-33-generic (x86_64)GNOME Shell 3.36.2X Server 1.20.8NVIDIA 440.644.6.0OpenCL 1.2 CUDA 10.2.141GCC 9.3.0ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLOpenCLCompilerFile-SystemScreen ResolutionLenovo-i5-9400-ssd-ubuntu-scicomp BenchmarksSystem Logs- CXXFLAGS="-O3 -pipe -march=native -flto" CFLAGS="-O3 -pipe -march=native -flto" FFLAGS="-O3 -pipe -march=native -flto" - --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate performance - CPU Microcode: 0xcc- GPU Compute Cores: 896- itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + tsx_async_abort: Not affected

lenovo-i5-9400-ssd-ubuntu-scicompminife: Smallcloverleaf: Lagrangian-Eulerian Hydrodynamicscp2k: Fayalite-FIST Datanamd: ATPase Simulation - 327,506 Atomsneat: amg: ffte: N=256, 1D Complex FFT Routinefftw: Stock - 1D FFT Size 32fftw: Stock - 2D FFT Size 32fftw: Stock - 1D FFT Size 4096fftw: Stock - 2D FFT Size 4096fftw: Float + SSE - 1D FFT Size 32fftw: Float + SSE - 2D FFT Size 32fftw: Float + SSE - 1D FFT Size 4096fftw: Float + SSE - 2D FFT Size 4096pennant: sedovbigpennant: leblancbigmrbayes: Primate Phylogeny Analysisqmcpack: hmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentlammps: Rhodopsin Proteinlulesh: arrayfire: BLAS CPUmt-dgemm: Sustained Floating-Point Ratehimeno: Poisson Pressure Solvergromacs: Water Benchmarkoctave-benchmark: lenovo-i5-9400-ssd-ubuntu-scicomp4415.054.85907.7282.9074626.62833961.318609.561101213890102937327.3156794739949103228151849.5901438.71992.379399.744.0722.9944.705723.41629613.7621.9203024021.7392880.6727.417OpenBenchmarking.org

miniFE

MiniFE Finite Element is an application for unstructured implicit finite element codes. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgCG Mflops, More Is BetterminiFE 2.2Problem Size: Smalllenovo-i5-9400-ssd-ubuntu-scicomp9001800270036004500SE +/- 0.68, N = 34415.051. (CXX) g++ options: -O3 -fopenmp -pthread -lmpi_cxx -lmpi

CloverLeaf

CloverLeaf is a Lagrangian-Eulerian hydrodynamics benchmark. This test profile currently makes use of CloverLeaf's OpenMP version and benchmarked with the clover_bm8192.in input file. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCloverLeafLagrangian-Eulerian Hydrodynamicslenovo-i5-9400-ssd-ubuntu-scicomp1.09132.18263.27394.36525.4565SE +/- 0.02, N = 34.851. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp

CP2K Molecular Dynamics

CP2K is an open-source molecular dynamics software package focused on quantum chemistry and solid-state physics. This test profile currently makes use of the OpenMP implementation and using the Fayalite-FIST molecular dynamics run and measures the total time to complete. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCP2K Molecular Dynamics 6.1Fayalite-FIST Datalenovo-i5-9400-ssd-ubuntu-scicomp2004006008001000907.73

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 Atomslenovo-i5-9400-ssd-ubuntu-scicomp0.65421.30841.96262.61683.271SE +/- 0.00232, N = 32.90746

Nebular Empirical Analysis Tool

NEAT is the Nebular Empirical Analysis Tool for empirical analysis of ionised nebulae, with uncertainty propagation. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterNebular Empirical Analysis Tool 2020-02-29lenovo-i5-9400-ssd-ubuntu-scicomp612182430SE +/- 0.07, N = 326.631. (F9X) gfortran options: -O3 -pipe -march=native -flto -cpp -ffree-line-length-0 -Jsource/ -fopenmp -fno-backtrace

Algebraic Multi-Grid Benchmark

AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFigure Of Merit, More Is BetterAlgebraic Multi-Grid Benchmarklenovo-i5-9400-ssd-ubuntu-scicomp7K14K21K28K35KSE +/- 297.51, N = 333961.311. (CC) gcc options: -lparcsr_ls -lparcsr_mv -lseq_mv -lIJ_mv -lkrylov -lHYPRE_utilities -lm -fopenmp -pthread -lmpi

FFTE

FFTE is a package by Daisuke Takahashi to compute Discrete Fourier Transforms of 1-, 2- and 3- dimensional sequences of length (2^p)*(3^q)*(5^r). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 6.0Test: N=256, 1D Complex FFT Routinelenovo-i5-9400-ssd-ubuntu-scicomp2K4K6K8K10KSE +/- 18.90, N = 38609.561. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

FFTW

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 32lenovo-i5-9400-ssd-ubuntu-scicomp2K4K6K8K10KSE +/- 30.11, N = 3110121. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 32lenovo-i5-9400-ssd-ubuntu-scicomp3K6K9K12K15KSE +/- 12.34, N = 3138901. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 4096lenovo-i5-9400-ssd-ubuntu-scicomp2K4K6K8K10KSE +/- 28.69, N = 3102931. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 4096lenovo-i5-9400-ssd-ubuntu-scicomp16003200480064008000SE +/- 8.97, N = 37327.31. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 32lenovo-i5-9400-ssd-ubuntu-scicomp3K6K9K12K15KSE +/- 72.86, N = 3156791. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 32lenovo-i5-9400-ssd-ubuntu-scicomp10K20K30K40K50KSE +/- 620.46, N = 4473991. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 4096lenovo-i5-9400-ssd-ubuntu-scicomp11K22K33K44K55KSE +/- 292.88, N = 3491031. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 4096lenovo-i5-9400-ssd-ubuntu-scicomp5K10K15K20K25KSE +/- 379.89, N = 3228151. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

Pennant

Pennant is an application focused on hydrodynamics on general unstructured meshes in 2D. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: sedovbiglenovo-i5-9400-ssd-ubuntu-scicomp400800120016002000SE +/- 0.73, N = 31849.591. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: leblancbiglenovo-i5-9400-ssd-ubuntu-scicomp30060090012001500SE +/- 1.31, N = 31438.721. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysislenovo-i5-9400-ssd-ubuntu-scicomp20406080100SE +/- 0.77, N = 392.381. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O3 -std=c99 -pedantic -pipe -march=native -flto -lm -lreadline

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8lenovo-i5-9400-ssd-ubuntu-scicomp90180270360450399.741. (CXX) g++ options: -O3 -pipe -march=native -flto -fopenmp -fomit-frame-pointer -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchlenovo-i5-9400-ssd-ubuntu-scicomp0.91621.83242.74863.66484.581SE +/- 0.002, N = 34.0721. (CC) gcc options: -O3 -pipe -march=native -flto -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentlenovo-i5-9400-ssd-ubuntu-scicomp0.67371.34742.02112.69483.3685SE +/- 0.017, N = 32.9941. (CC) gcc options: -std=c99 -O3 -lm -lpthread

LAMMPS Molecular Dynamics Simulator

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 9Jan2020Model: Rhodopsin Proteinlenovo-i5-9400-ssd-ubuntu-scicomp1.05862.11723.17584.23445.293SE +/- 0.002, N = 34.7051. (CXX) g++ options: -O3 -pipe -march=native -flto -rdynamic -ljpeg -lpng -lz -lfftw3 -lm

LULESH

LULESH is the Livermore Unstructured Lagrangian Explicit Shock Hydrodynamics. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgz/s, More Is BetterLULESH 2.0.3lenovo-i5-9400-ssd-ubuntu-scicomp160320480640800SE +/- 0.71, N = 3723.421. (CXX) g++ options: -O3 -fopenmp -lm -pthread -lmpi_cxx -lmpi

ArrayFire

ArrayFire is an GPU and CPU numeric processing library, this test uses the built-in CPU and OpenCL ArrayFire benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS, More Is BetterArrayFire 3.7Test: BLAS CPUlenovo-i5-9400-ssd-ubuntu-scicomp130260390520650SE +/- 0.39, N = 3613.761. (CXX) g++ options: -O3 -pipe -march=native -flto -rdynamic

ACES DGEMM

This is a multi-threaded DGEMM benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOP/s, More Is BetterACES DGEMM 1.0Sustained Floating-Point Ratelenovo-i5-9400-ssd-ubuntu-scicomp0.43210.86421.29631.72842.1605SE +/- 0.006522, N = 31.9203021. (CC) gcc options: -O3 -march=native -fopenmp -pipe -flto

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverlenovo-i5-9400-ssd-ubuntu-scicomp9001800270036004500SE +/- 2.97, N = 34021.741. (CC) gcc options: -O3 -pipe -march=native -flto -mavx2

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.1Water Benchmarklenovo-i5-9400-ssd-ubuntu-scicomp0.15120.30240.45360.60480.756SE +/- 0.008, N = 30.6721. (CXX) g++ options: -O3 -pipe -march=native -flto -pthread -lrt -lpthread -lm

GNU Octave Benchmark

This test profile measures how long it takes to complete several reference GNU Octave files via octave-benchmark. GNU Octave is used for numerical computations and is an open-source alternative to MATLAB. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterGNU Octave Benchmark 5.2.0lenovo-i5-9400-ssd-ubuntu-scicomp246810SE +/- 0.012, N = 57.417

lenovo-i5-9400-ssd-ubuntu-scicomp

Processor: Intel Core i5-9400F @ 4.10GHz (6 Cores), Motherboard: LENOVO 36EB (O3QKT3CA BIOS), Chipset: Intel Cannon Lake PCH, Memory: 2 x 16384 MB DDR4-2400MT/s 16GF2X08QFHH36-135-K, Disk: 1000GB PNY CS3030 1TB SSD + 1000GB Western Digital WD10EZEX-08W, Graphics: NVIDIA GeForce GTX 1650 4GB (1485/4001MHz), Audio: Realtek ALC233, Monitor: ASUS PA238, Network: Intel I219-V

OS: Ubuntu 20.04, Kernel: 5.4.0-33-generic (x86_64), Desktop: GNOME Shell 3.36.2, Display Server: X Server 1.20.8, Display Driver: NVIDIA 440.64, OpenGL: 4.6.0, OpenCL: OpenCL 1.2 CUDA 10.2.141, Compiler: GCC 9.3.0, File-System: ext4, Screen Resolution: 1920x1080

Environment Notes: CXXFLAGS="-O3 -pipe -march=native -flto" CFLAGS="-O3 -pipe -march=native -flto" FFLAGS="-O3 -pipe -march=native -flto"
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate performance - CPU Microcode: 0xcc
OpenCL Notes: GPU Compute Cores: 896
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + tsx_async_abort: Not affected

Testing initiated at 29 May 2020 17:36 by user jhamby.