lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp

Windows 10 version 2004 with WSL 2 and Ubuntu 20.04 on a 1TB PNY SSD.

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Result
Identifier
Performance Per
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Date
Run
  Test
  Duration
lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp
May 25 2020
  3 Hours, 29 Minutes
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lenovo-i5-9400-ssd-ubuntu-wsl2-scicompOpenBenchmarking.orgPhoronix Test SuiteIntel Core i5-9400F (6 Cores)26GB275GB Virtual Disk + 524GB Virtual DiskUbuntu 20.044.19.84-microsoft-standard (x86_64)GCC 9.3.0ext4microsoftProcessorMemoryDiskOSKernelCompilerFile-SystemSystem LayerLenovo-i5-9400-ssd-ubuntu-wsl2-scicomp BenchmarksSystem Logs- CXXFLAGS="-O3 -pipe -march=native -flto" CFLAGS="-O3 -pipe -march=native -flto" FFLAGS="-O3 -pipe -march=native -flto" - --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - CPU Microcode: 0xffffffff- itlb_multihit: vulnerable + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + tsx_async_abort: Not affected

lenovo-i5-9400-ssd-ubuntu-wsl2-scicompcp2k: Fayalite-FIST Datanamd: ATPase Simulation - 327,506 Atomsneat: amg: ffte: N=256, 1D Complex FFT Routinefftw: Stock - 1D FFT Size 32fftw: Stock - 2D FFT Size 32fftw: Stock - 1D FFT Size 4096fftw: Stock - 2D FFT Size 4096fftw: Float + SSE - 1D FFT Size 32fftw: Float + SSE - 2D FFT Size 32fftw: Float + SSE - 1D FFT Size 4096fftw: Float + SSE - 2D FFT Size 4096mrbayes: Primate Phylogeny Analysisqmcpack: hmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentlammps: Rhodopsin Proteinarrayfire: BLAS CPUmt-dgemm: Sustained Floating-Point Ratehimeno: Poisson Pressure Solvergromacs: Water Benchmarklenovo-i5-9400-ssd-ubuntu-wsl2-scicomp666.7452.9658032.489107922.858425.2110400135869992.86596.41537946373475621955694.421253.754.1593.8214.602629.9130.3897723718.8947150.679OpenBenchmarking.org

CP2K Molecular Dynamics

CP2K is an open-source molecular dynamics software package focused on quantum chemistry and solid-state physics. This test profile currently makes use of the OpenMP implementation and using the Fayalite-FIST molecular dynamics run and measures the total time to complete. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCP2K Molecular Dynamics 6.1Fayalite-FIST Datalenovo-i5-9400-ssd-ubuntu-wsl2-scicomp140280420560700666.75

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 Atomslenovo-i5-9400-ssd-ubuntu-wsl2-scicomp0.66731.33462.00192.66923.3365SE +/- 0.00412, N = 32.96580

Nebular Empirical Analysis Tool

NEAT is the Nebular Empirical Analysis Tool for empirical analysis of ionised nebulae, with uncertainty propagation. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterNebular Empirical Analysis Tool 2020-02-29lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp816243240SE +/- 0.34, N = 1232.491. (F9X) gfortran options: -O3 -pipe -march=native -flto -cpp -ffree-line-length-0 -Jsource/ -fopenmp -fno-backtrace

Algebraic Multi-Grid Benchmark

AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFigure Of Merit, More Is BetterAlgebraic Multi-Grid Benchmarklenovo-i5-9400-ssd-ubuntu-wsl2-scicomp20K40K60K80K100KSE +/- 1017.30, N = 15107922.851. (CC) gcc options: -lparcsr_ls -lparcsr_mv -lseq_mv -lIJ_mv -lkrylov -lHYPRE_utilities -lm -fopenmp -pthread -lmpi

FFTE

FFTE is a package by Daisuke Takahashi to compute Discrete Fourier Transforms of 1-, 2- and 3- dimensional sequences of length (2^p)*(3^q)*(5^r). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 6.0Test: N=256, 1D Complex FFT Routinelenovo-i5-9400-ssd-ubuntu-wsl2-scicomp2K4K6K8K10KSE +/- 4.95, N = 38425.211. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

FFTW

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 32lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp2K4K6K8K10KSE +/- 83.76, N = 3104001. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 32lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp3K6K9K12K15KSE +/- 95.38, N = 3135861. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 4096lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp2K4K6K8K10KSE +/- 29.54, N = 39992.81. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 4096lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp14002800420056007000SE +/- 34.13, N = 36596.41. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 32lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp3K6K9K12K15KSE +/- 187.25, N = 3153791. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 32lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp10K20K30K40K50KSE +/- 257.69, N = 3463731. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 4096lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp10K20K30K40K50KSE +/- 453.51, N = 3475621. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 4096lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp4K8K12K16K20KSE +/- 184.79, N = 9195561. (CC) gcc options: -pthread -O3 -pipe -march=native -flto -lm

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysislenovo-i5-9400-ssd-ubuntu-wsl2-scicomp20406080100SE +/- 0.73, N = 394.421. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -pipe -march=native -flto -lm -lreadline

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8lenovo-i5-9400-ssd-ubuntu-wsl2-scicomp60120180240300253.751. (CXX) g++ options: -O3 -pipe -march=native -flto -fopenmp -fomit-frame-pointer -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchlenovo-i5-9400-ssd-ubuntu-wsl2-scicomp0.93581.87162.80743.74324.679SE +/- 0.001, N = 34.1591. (CC) gcc options: -O3 -pipe -march=native -flto -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentlenovo-i5-9400-ssd-ubuntu-wsl2-scicomp0.85971.71942.57913.43884.2985SE +/- 0.034, N = 153.8211. (CC) gcc options: -std=c99 -O3 -lm -lpthread

LAMMPS Molecular Dynamics Simulator

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 9Jan2020Model: Rhodopsin Proteinlenovo-i5-9400-ssd-ubuntu-wsl2-scicomp1.03552.0713.10654.1425.1775SE +/- 0.010, N = 34.6021. (CXX) g++ options: -O3 -pipe -march=native -flto -rdynamic -ljpeg -lpng -lz -lfftw3 -lm

ArrayFire

ArrayFire is an GPU and CPU numeric processing library, this test uses the built-in CPU and OpenCL ArrayFire benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS, More Is BetterArrayFire 3.7Test: BLAS CPUlenovo-i5-9400-ssd-ubuntu-wsl2-scicomp140280420560700SE +/- 3.25, N = 3629.911. (CXX) g++ options: -O3 -pipe -march=native -flto -rdynamic

ACES DGEMM

This is a multi-threaded DGEMM benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOP/s, More Is BetterACES DGEMM 1.0Sustained Floating-Point Ratelenovo-i5-9400-ssd-ubuntu-wsl2-scicomp0.08770.17540.26310.35080.4385SE +/- 0.006175, N = 90.3897721. (CC) gcc options: -O3 -march=native -fopenmp -pipe -flto

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverlenovo-i5-9400-ssd-ubuntu-wsl2-scicomp8001600240032004000SE +/- 7.61, N = 33718.891. (CC) gcc options: -O3 -pipe -march=native -flto -mavx2

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.1Water Benchmarklenovo-i5-9400-ssd-ubuntu-wsl2-scicomp0.15280.30560.45840.61120.764SE +/- 0.002, N = 30.6791. (CXX) g++ options: -O3 -pipe -march=native -flto -pthread -lrt -lpthread -lm