bmark_result.txt

lxc testing on Debian GNU/Linux 10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2005250-NI-BMARKRESU26
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
debian_vm
May 24 2020
  12 Hours, 1 Minute
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debian_vm

Processor: 2 x Intel Xeon E5-2670 0 @ 3.30GHz (16 Cores / 32 Threads), Motherboard: Dell 0KCKR5 (2.9.0 BIOS), Memory: 12 x 8192 MB DDR3-1333MT/s HMT31GR7BFR4C-H9, Disk: 1199GB PERC H710, Graphics: mgag200drmfb

OS: Debian GNU/Linux 10, Kernel: 5.4.34-1-pve (x86_64), Compiler: GCC 8.3.0, File-System: ext4, Screen Resolution: 1024x768, System Layer: lxc

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate performance - CPU Microcode: 0x718
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + tsx_async_abort: Not affected

bmark_result.txtOpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon E5-2670 0 @ 3.30GHz (16 Cores / 32 Threads)Dell 0KCKR5 (2.9.0 BIOS)12 x 8192 MB DDR3-1333MT/s HMT31GR7BFR4C-H91199GB PERC H710mgag200drmfbDebian GNU/Linux 105.4.34-1-pve (x86_64)GCC 8.3.0ext41024x768lxcProcessorMotherboardMemoryDiskGraphicsOSKernelCompilerFile-SystemScreen ResolutionSystem LayerBmark_result.txt BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate performance - CPU Microcode: 0x718- itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + tsx_async_abort: Not affected

bmark_result.txthpcc: G-HPLcp2k: Fayalite-FIST Datanamd: ATPase Simulation - 327,506 Atomsneat: amg: ffte: N=256, 1D Complex FFT Routinefftw: Stock - 1D FFT Size 32fftw: Stock - 2D FFT Size 32fftw: Stock - 1D FFT Size 4096fftw: Stock - 2D FFT Size 4096fftw: Float + SSE - 1D FFT Size 32fftw: Float + SSE - 2D FFT Size 32fftw: Float + SSE - 1D FFT Size 4096fftw: Float + SSE - 2D FFT Size 4096mrbayes: Primate Phylogeny Analysisnwchem: C240 Buckyballqmcpack: hmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentlammps: Rhodopsin Proteinarrayfire: BLAS CPUmt-dgemm: Sustained Floating-Point Ratehimeno: Poisson Pressure Solvergromacs: Water Benchmarkdebian_vm77.910831857.5431.4956241.42729287144873.675131.05502.84289.93186.16546.012702134147970.2263.72015081.21661.222.0574.8266.683631.4002.8234172477.0281690.843OpenBenchmarking.org

HPC Challenge

HPC Challenge (HPCC) is a cluster-focused benchmark consisting of the HPL Linpack TPP benchmark, DGEMM, STREAM, PTRANS, RandomAccess, FFT, and communication bandwidth and latency. This HPC Challenge test profile attempts to ship with standard yet versatile configuration/input files though they can be modified. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS, More Is BetterHPC Challenge 1.5.0Test / Class: G-HPLdebian_vm20406080100SE +/- 0.28, N = 377.911. (CC) gcc options: -lblas -lm -pthread -lmpi -fomit-frame-pointer -funroll-loops2. ATLAS + Open MPI 3.1.3

CP2K Molecular Dynamics

CP2K is an open-source molecular dynamics software package focused on quantum chemistry and solid-state physics. This test profile currently makes use of the OpenMP implementation and using the Fayalite-FIST molecular dynamics run and measures the total time to complete. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCP2K Molecular Dynamics 6.1Fayalite-FIST Datadebian_vm4008001200160020001857.54

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 Atomsdebian_vm0.33650.6731.00951.3461.6825SE +/- 0.02180, N = 31.49562

Nebular Empirical Analysis Tool

NEAT is the Nebular Empirical Analysis Tool for empirical analysis of ionised nebulae, with uncertainty propagation. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterNebular Empirical Analysis Tool 2020-02-29debian_vm918273645SE +/- 0.69, N = 1541.431. (F9X) gfortran options: -cpp -ffree-line-length-0 -Jsource/ -fopenmp -O3 -fno-backtrace

Algebraic Multi-Grid Benchmark

AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFigure Of Merit, More Is BetterAlgebraic Multi-Grid Benchmarkdebian_vm600K1200K1800K2400K3000KSE +/- 309674.66, N = 1229287141. (CC) gcc options: -lparcsr_ls -lparcsr_mv -lseq_mv -lIJ_mv -lkrylov -lHYPRE_utilities -lm -fopenmp -pthread -lmpi

FFTE

FFTE is a package by Daisuke Takahashi to compute Discrete Fourier Transforms of 1-, 2- and 3- dimensional sequences of length (2^p)*(3^q)*(5^r). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 6.0Test: N=256, 1D Complex FFT Routinedebian_vm10002000300040005000SE +/- 1.64, N = 34873.671. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

FFTW

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 32debian_vm11002200330044005500SE +/- 33.37, N = 35131.01. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 32debian_vm12002400360048006000SE +/- 2.86, N = 35502.81. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 4096debian_vm9001800270036004500SE +/- 2.73, N = 34289.91. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 4096debian_vm7001400210028003500SE +/- 34.71, N = 73186.11. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 32debian_vm14002800420056007000SE +/- 37.83, N = 36546.01. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 32debian_vm3K6K9K12K15KSE +/- 34.04, N = 3127021. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 4096debian_vm3K6K9K12K15KSE +/- 73.11, N = 3134141. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 4096debian_vm2K4K6K8K10KSE +/- 40.23, N = 37970.21. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisdebian_vm60120180240300SE +/- 1.34, N = 3263.721. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -O3 -std=c99 -pedantic -lm

NWChem

NWChem is an open-source high performance computational chemistry package. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterNWChem 7.0Input: C240 Buckyballdebian_vm3K6K9K12K15K15081.21. (F9X) gfortran options: -lnwctask -lccsd -lmcscf -lselci -lmp2 -lmoints -lstepper -ldriver -loptim -lnwdft -lgradients -lcphf -lesp -lddscf -ldangchang -lguess -lhessian -lvib -lnwcutil -lrimp2 -lproperty -lsolvation -lnwints -lprepar -lnwmd -lnwpw -lofpw -lpaw -lpspw -lband -lnwpwlib -lcafe -lspace -lanalyze -lqhop -lpfft -ldplot -ldrdy -lvscf -lqmmm -lqmd -letrans -ltce -lbq -lmm -lcons -lperfm -ldntmc -lccca -ldimqm -lga -larmci -lpeigs -l64to32 -lopenblas -lpthread -lrt -llapack -lnwcblas -lmpi_usempif08 -lmpi_mpifh -lmpi -lcomex -lm -m64 -ffast-math -std=legacy -fdefault-integer-8 -finline-functions -O2

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8debian_vm4008001200160020001661.21. (CXX) g++ options: -fopenmp -fomit-frame-pointer -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -march=native -O3 -ffast-math -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchdebian_vm510152025SE +/- 0.35, N = 322.061. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentdebian_vm1.08592.17183.25774.34365.4295SE +/- 0.059, N = 154.8261. (CC) gcc options: -std=c99 -O3 -lm -lpthread

LAMMPS Molecular Dynamics Simulator

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 9Jan2020Model: Rhodopsin Proteindebian_vm246810SE +/- 0.067, N = 156.6831. (CXX) g++ options: -fopenmp -O3 -rdynamic -ljpeg -lfftw3 -lm

ArrayFire

ArrayFire is an GPU and CPU numeric processing library, this test uses the built-in CPU and OpenCL ArrayFire benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS, More Is BetterArrayFire 3.7Test: BLAS CPUdebian_vm140280420560700SE +/- 3.53, N = 3631.401. (CXX) g++ options: -rdynamic

ACES DGEMM

This is a multi-threaded DGEMM benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOP/s, More Is BetterACES DGEMM 1.0Sustained Floating-Point Ratedebian_vm0.63531.27061.90592.54123.1765SE +/- 0.035787, N = 32.8234171. (CC) gcc options: -O3 -march=native -fopenmp

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverdebian_vm5001000150020002500SE +/- 20.96, N = 32477.031. (CC) gcc options: -O3

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.1Water Benchmarkdebian_vm0.18970.37940.56910.75880.9485SE +/- 0.003, N = 30.8431. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm

debian_vm

Processor: 2 x Intel Xeon E5-2670 0 @ 3.30GHz (16 Cores / 32 Threads), Motherboard: Dell 0KCKR5 (2.9.0 BIOS), Memory: 12 x 8192 MB DDR3-1333MT/s HMT31GR7BFR4C-H9, Disk: 1199GB PERC H710, Graphics: mgag200drmfb

OS: Debian GNU/Linux 10, Kernel: 5.4.34-1-pve (x86_64), Compiler: GCC 8.3.0, File-System: ext4, Screen Resolution: 1024x768, System Layer: lxc

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate performance - CPU Microcode: 0x718
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + tsx_async_abort: Not affected

Testing initiated at 24 May 2020 01:33 by user root.