bio_test_1.txt

AMD Ryzen 9 3900X 12-Core testing with a ASUS PRIME B350-PLUS (5407 BIOS) and eVGA NVIDIA GeForce GTX 1080 Ti 11GB on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2005139-NI-BIOTEST1T78
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Performance Per
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  Duration
bio_test_1
May 13 2020
  22 Minutes
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bio_test_1.txtOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 9 3900X 12-Core @ 3.80GHz (12 Cores / 24 Threads)ASUS PRIME B350-PLUS (5407 BIOS)AMD Starship/Matisse32GBSamsung SSD 970 PRO 512GBeVGA NVIDIA GeForce GTX 1080 Ti 11GB (1556/5508MHz)NVIDIA GP102 HDMI AudioS32D850Realtek RTL8111/8168/8411Ubuntu 20.045.4.0-29-generic (x86_64)GNOME Shell 3.36.1X Server 1.20.8NVIDIA 440.644.6.0OpenCL 1.2 CUDA 10.2.141GCC 9.3.0 + CUDA 10.2ext42560x1440ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLOpenCLCompilerFile-SystemScreen ResolutionBio_test_1.txt BenchmarksSystem Logs- NVM_CD_FLAGS=- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8701013- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + tsx_async_abort: Not affected

bio_test_1.txtmrbayes: Primate Phylogeny Analysisqmcpack: hmmer: Pfam Database Searchhimeno: Poisson Pressure Solverbio_test_170.201912.655.1804701.586707OpenBenchmarking.org

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisbio_test_11632486480SE +/- 0.11, N = 370.20

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8bio_test_12004006008001000912.65

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchbio_test_11.16552.3313.49654.6625.8275SE +/- 0.015, N = 35.180

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverbio_test_110002000300040005000SE +/- 12.31, N = 34701.59