namdbenchmark

Intel Core i9-9880H testing with a LENOVO 20QTS00Y00 (N2OET41W 1.28 BIOS) and NVIDIA Quadro T2000 4GB on Ubuntu 19.10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2004076-VE-NAMDBENCH39
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
faraday-namd
April 07 2020
  9 Minutes


namdbenchmarkOpenBenchmarking.orgPhoronix Test SuiteIntel Core i9-9880H @ 4.80GHz (8 Cores / 16 Threads)LENOVO 20QTS00Y00 (N2OET41W 1.28 BIOS)Intel Cannon Lake PCH64GB2000GB Samsung SSD 970 EVO 2TB + 512GB INTEL SSDPEKKF512G8LNVIDIA Quadro T2000 4GB (345/810MHz)Conexant CX8070Intel I219-LM + Intel Device 2723Ubuntu 19.105.3.0-42-generic (x86_64)KDE Plasma 5.16.5X Server 1.20.5NVIDIA 435.21GCC 9.2.1 20191008ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutionNamdbenchmark PerformanceSystem Logs- Scaling Governor: intel_pstate powersave - CPU Microcode: 0xca- itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + tsx_async_abort: Mitigation of TSX disabled

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 Atomsfaraday-namd0.74841.49682.24522.99363.742SE +/- 0.05484, N = 33.32628