namdcudabenchmark

2 x Intel Xeon E5-2699 v4 testing with a Supermicro X10DRG-O+-CPU v1.00 (3.1 BIOS) and ASUS NVIDIA GV102 11GB on Ubuntu 18.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2004072-VE-NAMDCUDAB63
Jump To Table - Results

Statistics

Remove Outliers Before Calculating Averages

Graph Settings

Prefer Vertical Bar Graphs

Table

Show Detailed System Result Table

Run Management

Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
hydrogen-namd-cuda
April 07 2020
  7 Minutes


namdcudabenchmarkOpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon E5-2699 v4 @ 3.60GHz (44 Cores / 88 Threads)Supermicro X10DRG-O+-CPU v1.00 (3.1 BIOS)Intel Xeon E7 v4/Xeon504GB6 x 480GB SAMSUNG MZ7KM480 + 7682GB Micron_5210_MTFDASUS NVIDIA GV102 11GBNVIDIA TU102 HD Audio2 x Intel I350Ubuntu 18.044.15.0-88-generic (x86_64)KDE PlasmaX Server 1.19.6GCC 7.5.0 + CUDA 10.1ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerCompilerFile-SystemScreen ResolutionNamdcudabenchmark PerformanceSystem Logs- Scaling Governor: intel_pstate powersave - CPU Microcode: 0xb000038- itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + tsx_async_abort: Mitigation of Clear buffers; SMT vulnerable

NAMD CUDA

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. This version of the NAMD test profile uses CUDA GPU acceleration. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD CUDA 2.13ATPase Simulation - 327,506 Atomshydrogen-namd-cuda0.01720.03440.05160.06880.086SE +/- 0.00200, N = 130.07664