firefly

2 x Intel Xeon Platinum 8180M testing with a Dell 014X06 (2.2.11 BIOS) and Matrox G200eW3 32GB on CentOS Linux 8 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2003119-CLDO-FIREFLY46
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HPC - High Performance Computing 2 Tests
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namd
March 11 2020
  3 Minutes
cp2k
March 11 2020
  30 Minutes
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fireflyOpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon Platinum 8180M (56 Cores / 112 Threads)Dell 014X06 (2.2.11 BIOS)Intel Sky Lake-E DMI3 Registers3022GB2 x 6401GB Dell Flash PM1725b 6.4TB AIC + 240GB DELLBOSS VDMatrox G200eW3 32GB4 x Intel X710 for 10GbE SFP+CentOS Linux 84.18.0-147.5.1.el8_1.x86_64 (x86_64)X ServerGCC 8.3.1 20190507nfs1920x1200ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelDisplay ServerCompilerFile-SystemScreen ResolutionFirefly BenchmarksSystem Logs- nouveau.modeset=0- CPU Microcode: 0x200005e- itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + tsx_async_abort: Mitigation of Clear buffers; SMT vulnerable

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 Atomsnamd0.09190.18380.27570.36760.4595SE +/- 0.00069, N = 30.40838

CP2K Molecular Dynamics

CP2K is an open-source molecular dynamics software package focused on quantum chemistry and solid-state physics. This test profile currently makes use of the OpenMP implementation and using the Fayalite-FIST molecular dynamics run and measures the total time to complete. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCP2K Molecular Dynamics 6.1Fayalite-FIST Datacp2k4008001200160020001763.94