Clear Linux Intel Xeon Gold

Intel Xeon Gold 5218 testing with a Supermicro X11SPL-F v1.02 (3.1 BIOS) and ASPEED on Clear Linux OS 32530 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2003067-VE-CLEARLINU35
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
Xeon Gold 5218
March 06 2020
  1 Hour, 13 Minutes
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Clear Linux Intel Xeon GoldOpenBenchmarking.orgPhoronix Test SuiteIntel Xeon Gold 5218 @ 3.90GHz (16 Cores / 32 Threads)Supermicro X11SPL-F v1.02 (3.1 BIOS)Intel Sky Lake-E DMI3 Registers188GB3841GB Micron_9300_MTFDHAL3T8TDPASPEED2 x Intel I210Clear Linux OS 325305.5.7-916.native (x86_64)X ServerGCC 9.2.1 20200303 gcc_9_2_0_release-714-g224ca3bfe8 + Clang 9.0.1 + LLVM 9.0.1f2fs800x600ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelDisplay ServerCompilerFile-SystemScreen ResolutionClear Linux Intel Xeon Gold BenchmarksSystem Logs- CFFLAGS="-g -O3 -feliminate-unused-debug-types -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=32 -m64 -fasynchronous-unwind-tables -Wp,-D_REENTRANT -ftree-loop-distribute-patterns -Wl,-z -Wl,now -Wl,-z -Wl,relro -malign-data=abi -fno-semantic-interposition -ftree-vectorize -ftree-loop-vectorize -Wl,-sort-common -Wl,--enable-new-dtags" FFLAGS="-g -O3 -feliminate-unused-debug-types -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=32 -m64 -fasynchronous-unwind-tables -Wp,-D_REENTRANT -ftree-loop-distribute-patterns -Wl,-z -Wl,now -Wl,-z -Wl,relro -malign-data=abi -fno-semantic-interposition -ftree-vectorize -ftree-loop-vectorize -Wl,--enable-new-dtags -Wa,-mbranches-within-32B-boundaries" CXXFLAGS="-g -O3 -feliminate-unused-debug-types -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=32 -Wformat -Wformat-security -m64 -fasynchronous-unwind-tables -Wp,-D_REENTRANT -ftree-loop-distribute-patterns -Wl,-z -Wl,now -Wl,-z -Wl,relro -fno-semantic-interposition -ffat-lto-objects -fno-trapping-math -Wl,-sort-common -Wl,--enable-new-dtags -mtune=skylake -Wa,-mbranches-within-32B-boundaries -fvisibility-inlines-hidden -Wl,--enable-new-dtags" CFLAGS="-g -O3 -feliminate-unused-debug-types -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=32 -Wformat -Wformat-security -m64 -fasynchronous-unwind-tables -Wp,-D_REENTRANT -ftree-loop-distribute-patterns -Wl,-z -Wl,now -Wl,-z -Wl,relro -fno-semantic-interposition -ffat-lto-objects -fno-trapping-math -Wl,-sort-common -Wl,--enable-new-dtags -mtune=skylake -Wa,-mbranches-within-32B-boundaries" THEANO_FLAGS="floatX=float32,openmp=true,gcc.cxxflags="-ftree-vectorize -mavx"" - --build=x86_64-generic-linux --disable-libmpx --disable-libunwind-exceptions --disable-multiarch --disable-vtable-verify --disable-werror --enable-__cxa_atexit --enable-bootstrap --enable-cet --enable-clocale=gnu --enable-default-pie --enable-gnu-indirect-function --enable-languages=c,c++,fortran,go --enable-ld=default --enable-libstdcxx-pch --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --exec-prefix=/usr --includedir=/usr/include --target=x86_64-generic-linux --with-arch=westmere --with-gcc-major-version-only --with-glibc-version=2.19 --with-gnu-ld --with-isl --with-ppl=yes --with-tune=haswell - Scaling Governor: intel_pstate performance - CPU Microcode: 0x500002c- Python 3.8.1- itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + tsx_async_abort: Mitigation of TSX disabled

Clear Linux Intel Xeon Goldnamd: ATPase Simulation - 327,506 Atomsneat: amg: lulesh: arrayfire: BLAS CPUarrayfire: Conjugate Gradient CPUcompress-zstd: Compressing ubuntu-16.04.3-server-i386.img, Compression Level 19leveldb: Hot Readleveldb: Fill Syncleveldb: Fill Syncleveldb: Overwriteleveldb: Overwriteleveldb: Rand Fillleveldb: Rand Fillleveldb: Rand Readleveldb: Seek Randleveldb: Rand Deleteleveldb: Seq Fillleveldb: Seq Fillkeydb: intel-mpi: IMB-P2P PingPongintel-mpi: IMB-MPI1 Exchangeintel-mpi: IMB-MPI1 Exchangeintel-mpi: IMB-MPI1 PingPongintel-mpi: IMB-MPI1 Sendrecvintel-mpi: IMB-MPI1 Sendrecvgromacs: Water Benchmarkmlpack: scikit_icamlpack: scikit_qdamlpack: scikit_svmmlpack: scikit_linearridgeregressionXeon Gold 52181.5148819.00931646.3911.7540231001.2777.732126.27527.49528.2119.92430.4116.44930.3116.57127.56634.299115.01130.9114.711530843.219311183.79710147276.46133.555011.585884.6377.741.41541.2127.9029.412.39OpenBenchmarking.org

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 AtomsXeon Gold 52180.34080.68161.02241.36321.704SE +/- 0.00264, N = 31.51488

Nebular Empirical Analysis Tool

NEAT is the Nebular Empirical Analysis Tool for empirical analysis of ionised nebulae, with uncertainty propagation. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterNebular Empirical Analysis Tool 2020-02-29Xeon Gold 5218510152025SE +/- 0.02, N = 319.011. (F9X) gfortran options: -O3 -pipe -fexceptions -fstack-protector -m64 -malign-data=abi -ftree-vectorize -cpp -ffree-line-length-0 -Jsource/ -fopenmp -fno-backtrace

Algebraic Multi-Grid Benchmark

AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFigure Of Merit, More Is BetterAlgebraic Multi-Grid BenchmarkXeon Gold 52187K14K21K28K35KSE +/- 8.39, N = 331646.391. (CC) gcc options: -O3 -lparcsr_ls -lparcsr_mv -lseq_mv -lIJ_mv -lkrylov -lHYPRE_utilities -lm -fopenmp -pthread -lmpi

LULESH

LULESH is the Livermore Unstructured Lagrangian Explicit Shock Hydrodynamics. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgz/s, More Is BetterLULESH 2.0.3Xeon Gold 52183691215SE +/- 0.00, N = 311.751. (CXX) g++ options: -O3 -fopenmp -lm -pthread -lmpi

ArrayFire

ArrayFire is an GPU and CPU numeric processing library, this test uses the built-in CPU and OpenCL ArrayFire benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS, More Is BetterArrayFire 3.7Test: BLAS CPUXeon Gold 52182004006008001000SE +/- 2.04, N = 31001.281. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -rdynamic

OpenBenchmarking.orgms, Fewer Is BetterArrayFire 3.7Test: Conjugate Gradient CPUXeon Gold 5218246810SE +/- 0.087, N = 77.7321. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -rdynamic

Zstd Compression

This test measures the time needed to compress a sample file (an Ubuntu file-system image) using Zstd compression. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterZstd Compression 1.3.4Compressing ubuntu-16.04.3-server-i386.img, Compression Level 19Xeon Gold 5218306090120150SE +/- 0.28, N = 3126.281. (CC) gcc options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake

LevelDB

LevelDB is a key-value storage library developed by Google that supports making use of Snappy for data compression and has other modern features. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMicroseconds Per Op, Fewer Is BetterLevelDB 1.22Benchmark: Hot ReadXeon Gold 5218612182430SE +/- 0.08, N = 327.501. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMB/s, More Is BetterLevelDB 1.22Benchmark: Fill SyncXeon Gold 5218714212835SE +/- 0.06, N = 328.21. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMicroseconds Per Op, Fewer Is BetterLevelDB 1.22Benchmark: Fill SyncXeon Gold 5218306090120150SE +/- 0.28, N = 3119.921. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMB/s, More Is BetterLevelDB 1.22Benchmark: OverwriteXeon Gold 5218714212835SE +/- 0.03, N = 330.41. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMicroseconds Per Op, Fewer Is BetterLevelDB 1.22Benchmark: OverwriteXeon Gold 5218306090120150SE +/- 0.17, N = 3116.451. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMB/s, More Is BetterLevelDB 1.22Benchmark: Random FillXeon Gold 5218714212835SE +/- 0.10, N = 330.31. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMicroseconds Per Op, Fewer Is BetterLevelDB 1.22Benchmark: Random FillXeon Gold 5218306090120150SE +/- 0.32, N = 3116.571. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMicroseconds Per Op, Fewer Is BetterLevelDB 1.22Benchmark: Random ReadXeon Gold 5218612182430SE +/- 0.12, N = 327.571. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMicroseconds Per Op, Fewer Is BetterLevelDB 1.22Benchmark: Seek RandomXeon Gold 5218816243240SE +/- 0.10, N = 334.301. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMicroseconds Per Op, Fewer Is BetterLevelDB 1.22Benchmark: Random DeleteXeon Gold 5218306090120150SE +/- 0.20, N = 3115.011. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMB/s, More Is BetterLevelDB 1.22Benchmark: Sequential FillXeon Gold 5218714212835SE +/- 0.09, N = 330.91. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

OpenBenchmarking.orgMicroseconds Per Op, Fewer Is BetterLevelDB 1.22Benchmark: Sequential FillXeon Gold 5218306090120150SE +/- 0.34, N = 3114.711. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -lsnappy -lpthread

KeyDB

A benchmark of KeyDB as a multi-threaded fork of the Redis server. The KeyDB benchmark is conducted using memtier-benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgOps/sec, More Is BetterKeyDB 5.3.1Xeon Gold 5218110K220K330K440K550KSE +/- 2829.70, N = 3530843.211. (CXX) g++ options: -O2 -levent -lpthread -lz -lpcre

Intel MPI Benchmarks

Intel MPI Benchmarks for stressing MPI implementations. At this point the test profile aggregates results for some common MPI functionality. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgAverage Msg/sec, More Is BetterIntel MPI Benchmarks 2019.3Test: IMB-P2P PingPongXeon Gold 52182M4M6M8M10MSE +/- 27661.37, N = 39311183.80MIN: 4369 / MAX: 250983051. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -O0 -pedantic -fopenmp -pthread -lmpi

OpenBenchmarking.orgAverage Mbytes/sec, More Is BetterIntel MPI Benchmarks 2019.3Test: IMB-MPI1 ExchangeXeon Gold 521816003200480064008000SE +/- 3.49, N = 37276.46MAX: 28687.241. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -O0 -pedantic -fopenmp -pthread -lmpi

OpenBenchmarking.orgAverage usec, More Is BetterIntel MPI Benchmarks 2019.3Test: IMB-MPI1 ExchangeXeon Gold 5218306090120150SE +/- 0.10, N = 3133.55MIN: 0.63 / MAX: 3171.891. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -O0 -pedantic -fopenmp -pthread -lmpi

OpenBenchmarking.orgAverage Mbytes/sec, More Is BetterIntel MPI Benchmarks 2019.3Test: IMB-MPI1 PingPongXeon Gold 521811002200330044005500SE +/- 52.30, N = 35011.58MIN: 6.14 / MAX: 16921.981. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -O0 -pedantic -fopenmp -pthread -lmpi

OpenBenchmarking.orgAverage Mbytes/sec, More Is BetterIntel MPI Benchmarks 2019.3Test: IMB-MPI1 SendrecvXeon Gold 521813002600390052006500SE +/- 19.34, N = 35884.63MAX: 32566.821. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -O0 -pedantic -fopenmp -pthread -lmpi

OpenBenchmarking.orgAverage usec, More Is BetterIntel MPI Benchmarks 2019.3Test: IMB-MPI1 SendrecvXeon Gold 521820406080100SE +/- 0.17, N = 377.74MIN: 0.39 / MAX: 1735.81. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -O0 -pedantic -fopenmp -pthread -lmpi

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020Water BenchmarkXeon Gold 52180.31840.63680.95521.27361.592SE +/- 0.002, N = 31.4151. (CXX) g++ options: -O3 -pipe -fexceptions -fstack-protector -m64 -ffat-lto-objects -fno-trapping-math -mtune=skylake -pthread -lrt -lpthread -lm

Mlpack Benchmark

Mlpack benchmark scripts for machine learning libraries Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterMlpack BenchmarkBenchmark: scikit_icaXeon Gold 5218918273645SE +/- 0.26, N = 341.21

OpenBenchmarking.orgSeconds, Fewer Is BetterMlpack BenchmarkBenchmark: scikit_qdaXeon Gold 5218714212835SE +/- 0.05, N = 327.90

OpenBenchmarking.orgSeconds, Fewer Is BetterMlpack BenchmarkBenchmark: scikit_svmXeon Gold 5218714212835SE +/- 0.31, N = 329.41

OpenBenchmarking.orgSeconds, Fewer Is BetterMlpack BenchmarkBenchmark: scikit_linearridgeregressionXeon Gold 52180.53781.07561.61342.15122.689SE +/- 0.02, N = 32.39