Cascade GROMACS NAMD Renaissance

2 x Intel Xeon Platinum 8280 testing with a GIGABYTE MD61-SC2-00 v01000100 (T15 BIOS) and llvmpipe 377GB on Ubuntu 20.04 via the Phoronix Test Suite.

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Result
Identifier
Performance Per
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Date
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  Test
  Duration
2 x Intel Xeon Platinum 8280
March 01 2020
  47 Minutes
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2 x Intel Xeon Platinum 8280

Processor: 2 x Intel Xeon Platinum 8280 @ 4.00GHz (56 Cores / 112 Threads), Motherboard: GIGABYTE MD61-SC2-00 v01000100 (T15 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 378GB, Disk: 280GB INTEL SSDPED1D280GA, Graphics: llvmpipe 377GB, Monitor: VE228, Network: 2 x Intel X722 for 1GbE + 2 x QLogic FastLinQ QL41000 10/25/40/50GbE

OS: Ubuntu 20.04, Kernel: 5.6.0-050600rc3-generic (x86_64) 20200223, Desktop: GNOME Shell 3.34.3, Display Server: X Server 1.20.7, Display Driver: modesetting 1.20.7, OpenGL: 3.3 Mesa 20.0.0 (LLVM 9.0.1 256 bits), Compiler: GCC 9.2.1 20200220, File-System: ext4, Screen Resolution: 1920x1080

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave - CPU Microcode: 0x500002c
Java Notes: OpenJDK Runtime Environment (build 11.0.6+10-post-Ubuntu-1ubuntu1)
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + tsx_async_abort: Mitigation of TSX disabled

Cascade GROMACS NAMD RenaissanceOpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon Platinum 8280 @ 4.00GHz (56 Cores / 112 Threads)GIGABYTE MD61-SC2-00 v01000100 (T15 BIOS)Intel Sky Lake-E DMI3 Registers378GB280GB INTEL SSDPED1D280GAllvmpipe 377GBVE2282 x Intel X722 for 1GbE + 2 x QLogic FastLinQ QL41000 10/25/40/50GbEUbuntu 20.045.6.0-050600rc3-generic (x86_64) 20200223GNOME Shell 3.34.3X Server 1.20.7modesetting 1.20.73.3 Mesa 20.0.0 (LLVM 9.0.1 256 bits)GCC 9.2.1 20200220ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionCascade GROMACS NAMD Renaissance BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate powersave - CPU Microcode: 0x500002c- OpenJDK Runtime Environment (build 11.0.6+10-post-Ubuntu-1ubuntu1)- itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + tsx_async_abort: Mitigation of TSX disabled

Cascade GROMACS NAMD Renaissancenamd: ATPase Simulation - 327,506 Atomsrenaissance: Scala Dottyrenaissance: Rand Forestrenaissance: Twitter Finaglerenaissance: Apache Spark ALSrenaissance: Apache Spark Bayesrenaissance: Savina Reactors.IOrenaissance: Apache Spark PageRankrenaissance: Twitter HTTP Requestsrenaissance: In-Memory Database Shootoutrenaissance: Akka Unbalanced Cobwebbed Treerenaissance: Genetic Algorithm Using Jenetics + Futuresgromacs: Water Benchmark2 x Intel Xeon Platinum 82800.372486819.9946128.78848655.8566906.1543456.27527442.97823392.5209060.01316068.35223743.7616727.3795.735OpenBenchmarking.org

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 Atoms2 x Intel Xeon Platinum 82800.08380.16760.25140.33520.419SE +/- 0.00325, N = 110.37248

Renaissance

Renaissance is a suite of benchmarks designed to test the Java JVM from Apache Spark to a Twitter-like service to Scala and other features. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: Scala Dotty2 x Intel Xeon Platinum 828015003000450060007500SE +/- 57.71, N = 56819.99

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: Random Forest2 x Intel Xeon Platinum 828013002600390052006500SE +/- 77.05, N = 256128.79

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: Twitter Finagle2 x Intel Xeon Platinum 828010K20K30K40K50KSE +/- 470.31, N = 548655.86

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: Apache Spark ALS2 x Intel Xeon Platinum 828015003000450060007500SE +/- 41.67, N = 56906.15

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: Apache Spark Bayes2 x Intel Xeon Platinum 82807001400210028003500SE +/- 80.33, N = 203456.28

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: Savina Reactors.IO2 x Intel Xeon Platinum 82806K12K18K24K30KSE +/- 500.99, N = 2527442.98

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: Apache Spark PageRank2 x Intel Xeon Platinum 82805K10K15K20K25KSE +/- 178.63, N = 523392.52

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: Twitter HTTP Requests2 x Intel Xeon Platinum 82802K4K6K8K10KSE +/- 92.70, N = 59060.01

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: In-Memory Database Shootout2 x Intel Xeon Platinum 82803K6K9K12K15KSE +/- 198.80, N = 516068.35

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: Akka Unbalanced Cobwebbed Tree2 x Intel Xeon Platinum 82805K10K15K20K25KSE +/- 858.87, N = 2023743.76

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.10.0Test: Genetic Algorithm Using Jenetics + Futures2 x Intel Xeon Platinum 828014002800420056007000SE +/- 40.17, N = 56727.38

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020Water Benchmark2 x Intel Xeon Platinum 82801.29042.58083.87125.16166.452SE +/- 0.007, N = 35.7351. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm

2 x Intel Xeon Platinum 8280

Processor: 2 x Intel Xeon Platinum 8280 @ 4.00GHz (56 Cores / 112 Threads), Motherboard: GIGABYTE MD61-SC2-00 v01000100 (T15 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 378GB, Disk: 280GB INTEL SSDPED1D280GA, Graphics: llvmpipe 377GB, Monitor: VE228, Network: 2 x Intel X722 for 1GbE + 2 x QLogic FastLinQ QL41000 10/25/40/50GbE

OS: Ubuntu 20.04, Kernel: 5.6.0-050600rc3-generic (x86_64) 20200223, Desktop: GNOME Shell 3.34.3, Display Server: X Server 1.20.7, Display Driver: modesetting 1.20.7, OpenGL: 3.3 Mesa 20.0.0 (LLVM 9.0.1 256 bits), Compiler: GCC 9.2.1 20200220, File-System: ext4, Screen Resolution: 1920x1080

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave - CPU Microcode: 0x500002c
Java Notes: OpenJDK Runtime Environment (build 11.0.6+10-post-Ubuntu-1ubuntu1)
Security Notes: itlb_multihit: KVM: Mitigation of Split huge pages + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + tsx_async_abort: Mitigation of TSX disabled

Testing initiated at 1 March 2020 17:08 by user phoronix.