namd_r9-3900x-2666cl19-n1030-1

AMD Ryzen 9 3900X 12-Core testing with a ASUS PRIME B450M-A (1820 BIOS) and Gigabyte NVIDIA GeForce GT 1030 2GB on Ubuntu 19.10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1911263-AS-NAMDR939077
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
namd_r9-3900x-2666cl19-n1030-1
November 26 2019
  5 Minutes


namd_r9-3900x-2666cl19-n1030-1OpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 9 3900X 12-Core @ 3.80GHz (12 Cores / 24 Threads)ASUS PRIME B450M-A (1820 BIOS)AMD Starship/Matisse16384MB2000GB TOSHIBA HDWD120Gigabyte NVIDIA GeForce GT 1030 2GB (1227/3003MHz)NVIDIA GP108 HD Audio24MB65Realtek RTL8111/8168/8411Ubuntu 19.105.3.0-23-generic (x86_64)KDE Plasma 5.16.5X Server 1.20.5NVIDIA 435.214.6.0GCC 9.2.1 20191008ext41920x1200ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionNamd_r9-3900x-2666cl19-n1030-1 BenchmarksSystem Logs- Scaling Governor: acpi-cpufreq ondemand- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: always-on RSB filling + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13b1ATPase Simulation - 327,506 Atomsnamd_r9-3900x-2666cl19-n1030-10.32880.65760.98641.31521.644SE +/- 0.01452, N = 31.46150