baremetal-computational

Intel Core i3-6300 testing with a ASUS PRIME H270-PLUS (1205 BIOS) and Intel HD 530 on Ubuntu 18.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1910285-HYDR-BAREMET26
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Bioinformatics 2 Tests
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October 28 2019
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baremetal-computationalOpenBenchmarking.orgPhoronix Test SuiteIntel Core i3-6300 @ 3.80GHz (2 Cores / 4 Threads)ASUS PRIME H270-PLUS (1205 BIOS)Intel Xeon E3-1200 v5/E3-1500 + H2708192MB500GB Seagate ST9500325AS + 2GB Store n Go DriveIntel HD 530 (1150MHz)PLG2488HIntel 82572EI + Realtek RTL8111/8168/8411Ubuntu 18.045.0.0-32-generic (x86_64)GCC 7.4.0ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelCompilerFile-SystemScreen ResolutionBaremetal-computational BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate performance- bionic-hwe-mitigations=off: l1tf: Mitigation of PTE Inversion; VMX: vulnerable + mds: Vulnerable; SMT vulnerable + meltdown: Vulnerable + spec_store_bypass: Vulnerable + spectre_v1: Vulnerable: __user pointer sanitization and usercopy barriers only; no swapgs barriers + spectre_v2: Vulnerable IBPB: disabled STIBP: disabled - bionic-hwe: l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling

baremetal-computationalmrbayes: Primate Phylogeny Analysishmmer: Pfam Database Searchgmpbench: Total Timefhourstones: Complex Connect-4 Solvingbyte: Dhrystone 2scimark2: Compositecrafty: Elapsed Timetscp: AI Chess Performancenero2d: Total Timestockfish: Total Timeasmfish: 1024 Hash Memory, 26 Depthdcraw: RAW To PPM Image Conversionminion: Solitairesudokut: Total Timebionic-hwe-mitigations=offbionic-hwe109.5213.774850.8012359.1733872398.20574.6873894931260369169.635630746599157243.2470.1610.93110.1513.814837.6012353.1034250932.83574.4573758651262104173.035584818595940043.4270.4711.03OpenBenchmarking.org

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisbionic-hwe-mitigations=offbionic-hwe20406080100SE +/- 0.20, N = 3SE +/- 0.32, N = 3109.52110.151. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O3 -std=c99 -pedantic -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysisbionic-hwe-mitigations=offbionic-hwe20406080100Min: 109.31 / Avg: 109.52 / Max: 109.92Min: 109.76 / Avg: 110.15 / Max: 110.791. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O3 -std=c99 -pedantic -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchbionic-hwe-mitigations=offbionic-hwe48121620SE +/- 0.05, N = 3SE +/- 0.08, N = 313.7713.811. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchbionic-hwe-mitigations=offbionic-hwe48121620Min: 13.68 / Avg: 13.77 / Max: 13.85Min: 13.71 / Avg: 13.81 / Max: 13.961. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

GNU GMP GMPbench

GMPbench is a test of the GMP 6.1.2 math library. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGMPbench Score, More Is BetterGNU GMP GMPbench 6.1.2Total Timebionic-hwe-mitigations=offbionic-hwe100020003000400050004850.804837.601. (CC) gcc options: -O3 -fomit-frame-pointer -lm

Fhourstones

This integer benchmark solves positions in the game of Connect-4, as played on a vertical 7x6 board. By default, it uses a 64Mb transposition table with the twobig replacement strategy. Positions are represented as 64-bit bitboards, and the hash function is computed using a single 64-bit modulo operation, giving 64-bit machines a slight edge. The alpha-beta searcher sorts moves dynamically based on the history heuristic. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgKpos / sec, More Is BetterFhourstones 3.1Complex Connect-4 Solvingbionic-hwe-mitigations=offbionic-hwe3K6K9K12K15KSE +/- 8.42, N = 3SE +/- 5.71, N = 312359.1712353.101. (CC) gcc options: -O3
OpenBenchmarking.orgKpos / sec, More Is BetterFhourstones 3.1Complex Connect-4 Solvingbionic-hwe-mitigations=offbionic-hwe2K4K6K8K10KMin: 12343.2 / Avg: 12359.17 / Max: 12371.8Min: 12346.7 / Avg: 12353.1 / Max: 12364.51. (CC) gcc options: -O3

BYTE Unix Benchmark

This is a test of BYTE. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgLPS, More Is BetterBYTE Unix Benchmark 3.6Dhrystone 2bionic-hwe-mitigations=offbionic-hwe7M14M21M28M35MSE +/- 401378.95, N = 3SE +/- 345064.82, N = 833872398.2034250932.83
OpenBenchmarking.orgLPS, More Is BetterBYTE Unix Benchmark 3.6Dhrystone 2bionic-hwe-mitigations=offbionic-hwe6M12M18M24M30MMin: 33207617.7 / Avg: 33872398.2 / Max: 34594487.5Min: 31835499.1 / Avg: 34250932.83 / Max: 34599811.5

SciMark

This test runs the ANSI C version of SciMark 2.0, which is a benchmark for scientific and numerical computing developed by programmers at the National Institute of Standards and Technology. This test is made up of Fast Foruier Transform, Jacobi Successive Over-relaxation, Monte Carlo, Sparse Matrix Multiply, and dense LU matrix factorization benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterSciMark 2.0Compositebionic-hwe-mitigations=offbionic-hwe120240360480600SE +/- 0.19, N = 3SE +/- 0.24, N = 3574.68574.451. (CC) gcc options: -lm
OpenBenchmarking.orgMflops, More Is BetterSciMark 2.0Compositebionic-hwe-mitigations=offbionic-hwe100200300400500Min: 574.31 / Avg: 574.68 / Max: 574.87Min: 574.1 / Avg: 574.45 / Max: 574.911. (CC) gcc options: -lm

Crafty

This is a performance test of Crafty, an advanced open-source chess engine. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNodes Per Second, More Is BetterCrafty 25.2Elapsed Timebionic-hwe-mitigations=offbionic-hwe1.6M3.2M4.8M6.4M8MSE +/- 3915.66, N = 3SE +/- 2809.79, N = 3738949373758651. (CC) gcc options: -pthread -lstdc++ -fprofile-use -lm
OpenBenchmarking.orgNodes Per Second, More Is BetterCrafty 25.2Elapsed Timebionic-hwe-mitigations=offbionic-hwe1.3M2.6M3.9M5.2M6.5MMin: 7382512 / Avg: 7389493 / Max: 7396057Min: 7372009 / Avg: 7375864.67 / Max: 73813331. (CC) gcc options: -pthread -lstdc++ -fprofile-use -lm

TSCP

This is a performance test of TSCP, Tom Kerrigan's Simple Chess Program, which has a built-in performance benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNodes Per Second, More Is BetterTSCP 1.81AI Chess Performancebionic-hwe-mitigations=offbionic-hwe300K600K900K1200K1500KSE +/- 1583.29, N = 5SE +/- 1735.77, N = 5126036912621041. (CC) gcc options: -O3 -march=native
OpenBenchmarking.orgNodes Per Second, More Is BetterTSCP 1.81AI Chess Performancebionic-hwe-mitigations=offbionic-hwe200K400K600K800K1000KMin: 1257484 / Avg: 1260369.2 / Max: 1266156Min: 1257484 / Avg: 1262103.6 / Max: 12661561. (CC) gcc options: -O3 -march=native

Open FMM Nero2D

This is a test of Nero2D, which is a two-dimensional TM/TE solver for Open FMM. Open FMM is a free collection of electromagnetic software for scattering at very large objects. This test profile times how long it takes to solve one of the included 2D examples. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterOpen FMM Nero2D 2.0.2Total Timebionic-hwe-mitigations=offbionic-hwe4080120160200SE +/- 0.18, N = 3SE +/- 0.77, N = 3169.63173.031. (CXX) g++ options: -O2 -lfftw3 -llapack -lblas -lgfortran -lquadmath -lm -pthread -lmpi_cxx -lmpi
OpenBenchmarking.orgSeconds, Fewer Is BetterOpen FMM Nero2D 2.0.2Total Timebionic-hwe-mitigations=offbionic-hwe306090120150Min: 169.27 / Avg: 169.63 / Max: 169.86Min: 172.14 / Avg: 173.03 / Max: 174.571. (CXX) g++ options: -O2 -lfftw3 -llapack -lblas -lgfortran -lquadmath -lm -pthread -lmpi_cxx -lmpi

Stockfish

This is a test of Stockfish, an advanced C++11 chess benchmark that can scale up to 128 CPU cores. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNodes Per Second, More Is BetterStockfish 9Total Timebionic-hwe-mitigations=offbionic-hwe1.2M2.4M3.6M4.8M6MSE +/- 25835.11, N = 3SE +/- 20067.88, N = 3563074655848181. (CXX) g++ options: -m64 -lpthread -fno-exceptions -std=c++11 -pedantic -O3 -msse -msse3 -mpopcnt -flto
OpenBenchmarking.orgNodes Per Second, More Is BetterStockfish 9Total Timebionic-hwe-mitigations=offbionic-hwe1000K2000K3000K4000K5000KMin: 5580401 / Avg: 5630746 / Max: 5665988Min: 5555258 / Avg: 5584818 / Max: 56231101. (CXX) g++ options: -m64 -lpthread -fno-exceptions -std=c++11 -pedantic -O3 -msse -msse3 -mpopcnt -flto

asmFish

This is a test of asmFish, an advanced chess benchmark written in Assembly. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNodes/second, More Is BetterasmFish 2018-07-231024 Hash Memory, 26 Depthbionic-hwe-mitigations=offbionic-hwe1.3M2.6M3.9M5.2M6.5MSE +/- 30338.84, N = 3SE +/- 60827.12, N = 359915725959400
OpenBenchmarking.orgNodes/second, More Is BetterasmFish 2018-07-231024 Hash Memory, 26 Depthbionic-hwe-mitigations=offbionic-hwe1000K2000K3000K4000K5000KMin: 5932225 / Avg: 5991571.67 / Max: 6032191Min: 5874692 / Avg: 5959400 / Max: 6077373

dcraw

This test times how long it takes to convert several high-resolution RAW NEF image files to PPM image format using dcraw. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image Conversionbionic-hwe-mitigations=offbionic-hwe1020304050SE +/- 0.02, N = 3SE +/- 0.13, N = 343.2443.421. (CC) gcc options: -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image Conversionbionic-hwe-mitigations=offbionic-hwe918273645Min: 43.22 / Avg: 43.24 / Max: 43.27Min: 43.28 / Avg: 43.42 / Max: 43.671. (CC) gcc options: -lm

Minion

Minion is an open-source constraint solver that is designed to be very scalable. This test profile uses Minion's integrated benchmarking problems to solve. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 1.8Solitairebionic-hwe-mitigations=offbionic-hwe1632486480SE +/- 0.11, N = 3SE +/- 0.17, N = 370.1670.471. (CXX) g++ options: -std=gnu++11 -O3 -fomit-frame-pointer -rdynamic
OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 1.8Solitairebionic-hwe-mitigations=offbionic-hwe1428425670Min: 70.03 / Avg: 70.16 / Max: 70.37Min: 70.14 / Avg: 70.47 / Max: 70.71. (CXX) g++ options: -std=gnu++11 -O3 -fomit-frame-pointer -rdynamic

Sudokut

This is a test of Sudokut, which is a Sudoku puzzle solver written in Tcl. This test measures how long it takes to solve 100 Sudoku puzzles. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSudokut 0.4Total Timebionic-hwe-mitigations=offbionic-hwe3691215SE +/- 0.00, N = 3SE +/- 0.06, N = 310.9311.03
OpenBenchmarking.orgSeconds, Fewer Is BetterSudokut 0.4Total Timebionic-hwe-mitigations=offbionic-hwe3691215Min: 10.93 / Avg: 10.93 / Max: 10.94Min: 10.97 / Avg: 11.03 / Max: 11.15