r3600computational-biology

r3600computational-biology

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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
r3600computational-biology
September 04 2019
  11 Minutes
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r3600computational-biologyOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 5 3600 6-Core @ 3.60GHz (6 Cores / 12 Threads)ASRock B450M Pro4 (P3.50 BIOS)AMD Device 148016384MB204GB Maxtor 6B200M0 + 250GB CT250MX500SSD1ASUS NVIDIA GeForce GT 710 2GB (954/900MHz)NVIDIA GK208 HDMI/DPIPS235Realtek RTL8111/8168/8411MX 18.34.19.0-5-amd64 (x86_64)GNOME Shell 3.22.3X Server 1.19.2NVIDIA 390.1164.6.0 NVIDIA 390.116GCC 6.3.0 20170516ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionR3600computational-biology BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic -v - Scaling Governor: acpi-cpufreq ondemand- l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchr3600computational-biology246810SE +/- 0.02, N = 37.641. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentr3600computational-biology0.69531.39062.08592.78123.4765SE +/- 0.07, N = 123.091. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysisr3600computational-biology4080120160200SE +/- 0.04, N = 3180.821. (CC) gcc options: -O3 -msse -mfpmath=sse -march=native -lm -pthread -lmpi